Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq1 89.7 4e-13 seq32 86.0 5e-12 >seq16 Length=5655878 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || || | ||| ||||||| |||||||| ||| || || Sbjct 2199352 TCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAA 2199293 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||| ||| || | | |||||||||| || || ||||| | Sbjct 2199292 ATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTG 2199233 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| ||| |||| || ||||| ||||| || || |||||||| Sbjct 2199232 TCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACG 2199173 Query 48716 AAAATCTGCATCGT 48729 || |||||||| || Sbjct 2199172 AAGATCTGCATGGT 2199159 >seq1 Length=8341428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || |||||||||||||| | ||| | ||||||| ||| Sbjct 3817411 ATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTG 3817470 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | | ||||| || || | || |||||| ||| || || Sbjct 3817471 CTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTT 3817530 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | |||||||||| |||||| ||||| || || || || ||||| Sbjct 3817531 GGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 3817590 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| ||||| Sbjct 3817591 AAGAGTCTTGACAAAAATTTGCAT 3817614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||||||||||||||| |||| ||| ||| | | ||||||||||| Sbjct 3816741 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG-CAAGAGTCCTTCCATCCTCCAGCTG 3816799 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || | |||||| || || | | |||||| || |||||| Sbjct 3816800 CTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGAATTTT 3816859 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | | | |||||||||| ||| ||||| || || || || || | Sbjct 3816860 -TGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCAG 3816918 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | ||| || || || |||||||| Sbjct 3816919 TCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||||| || | ||||| || ||| || ||||||||||| || || Sbjct 3817844 CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCA 3817903 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| | ||||| || ||||| ||| || | || || || ||||||||| || Sbjct 3817904 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGA 3817963 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||| ||| ||||| ||||| | | || ||||| |||| ||||||| Sbjct 3817964 ATCCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTCCA 3818021 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || || || || || || || || || |||||| Sbjct 3818022 CCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCATC 3818071 >seq32 Length=4239389 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || || ||||| ||||| ||||| ||||| | ||| ||||||| Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | |||| | | ||| || || || | || ||||||||| Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | |||||||| | | |||| ||| | || |||||||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTG 977257 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||| || |||||| Sbjct 977258 CCAGTAAGGGTCTTCACAAATATTTGCATC 977287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421089663855464