Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq22 116 2e-21 seq34 114 7e-21 seq30 114 7e-21 seq1538 113 2e-20 seq11 113 2e-20 seq80 111 8e-20 seq7 111 8e-20 seq51 107 1e-18 seq25 105 3e-18 seq17 105 3e-18 seq90 102 4e-17 seq1 102 4e-17 >seq22 Length=5416867 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1504255 AAATAACAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1504196 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||||| |||||| Sbjct 1504195 GCTCTAACCAACTGAGCTAATAGGCCGT 1504168 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1501257 AAATAACAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1501198 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1501197 GCTCTAACCAACTGAGCTAATAGGCC 1501172 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1502575 AACAAACAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1502516 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1502515 GCTCTAACCAACTGAGCTAATAGGCC 1502490 Score = 111 bits (122), Expect = 8e-20 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| | ||| | |||||| | |||||||||| | | |||||||| ||||||||||||| Sbjct 2268632 ATATATTTATTTAAAAATTTA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTT 2268574 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| ||||||||||||||| |||| Sbjct 2268573 ATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2268537 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | ||| |||| ||||||||||||||||||||| | Sbjct 1501874 AAATAACAAAATTGGCCCATGCAGGTTTCGGACCTACGACCTTCGCGTTATTAGCACAAT 1501815 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1501814 GCTCTAACCAACTGAGCTAATAGGCC 1501789 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | || ||||| ||| |||||| |||||||||| || Sbjct 1500785 AAATAACAAAATTGGCCCATGCAGGTTTCAAACCTGCGATCTTCGCATTATTAGCACAAC 1500726 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||| ||| Sbjct 1500725 GCTCTAACCAACTGAGCTAATGAGCC 1500700 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| | |||||||| |||||||||||||||||| ||||||| ||||||| |||| Sbjct 1503686 TCGAACCTGCAACCTTCGCATTATTAGCACGACGCTCTAACCAACTAAGCTAATAGGCC 1503628 >seq34 Length=3787072 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 43066 AAAATTAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 43125 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 43126 CTCTAACCAACTGAGCTAATAGGCC 43150 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 79563 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 79622 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 79623 CAACTGAGCTAATAGGCC 79640 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 205995 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 205936 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 205935 CAACTGAGCTAATAGGCC 205918 >seq30 Length=4278129 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 2120996 AAAAAGCAACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 2120937 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 2120936 CTCTAACCAACTGAGCTAATAGGCC 2120912 Score = 109 bits (120), Expect = 3e-19 Identities = 75/85 (88%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 718323 AAAAAT---ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 718267 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 718266 CTCTAACCAACTGAGCTAATAGGCC 718242 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 718469 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 718410 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 718409 CAACTGAGCTAAAAGGCC 718392 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 132431 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 132372 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 132371 AACTGAGCTAATAGGCC 132355 >seq1538 Length=3159 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| || |||| |||||||||||| | | |||||||| ||||||||||||||||| | Sbjct 2208 TTAAAAATAAATTTAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAAC 2149 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 2148 ACGACGCTCTAACCAACTGAGCTAATAGGCC 2118 >seq11 Length=6895065 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4194800 AATACAAAAAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 4194859 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 4194860 GACGCTCTAACCAACTGAGCTAATAGGCC 4194888 Score = 109 bits (120), Expect = 3e-19 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| ||||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 1736702 TTAAAAAAAAA-CAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 1736645 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 1736644 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 1736614 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| | ||| ||||||||| | | |||||||| |||| |||||||||||||||| Sbjct 1573362 AATAAATGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCAC 1573421 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1573422 GACGCTCTAACCAACTGAGCTAATAGGCC 1573450 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4163799 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4163858 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4163859 TGAGCTAATAGGCC 4163872 >seq80 Length=1357521 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 24476 TAAAAAAT----TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 24531 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||| ||||| Sbjct 24532 CGCTCTAACCAACTGAGCTAATAGGCCG 24559 >seq7 Length=7328097 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 6835437 AAAAAA--AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 6835380 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 6835379 GCTCTAACCAACTGAGCTAATAGGCCG 6835353 >seq51 Length=2507997 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 926414 AAAAAAGAAGAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 926473 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 926474 GCTCTAACCAACTGAGCTAATAGGCC 926499 Score = 84.2 bits (92), Expect = 1e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 926537 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 926586 >seq25 Length=4677790 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1996553 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1996612 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1996613 CTGAGCTAATAGGCC 1996627 >seq17 Length=6318978 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2302713 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2302654 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2302653 CTGAGCTAATAGGCC 2302639 >seq90 Length=947186 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 542178 AAAGTGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 542119 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 542118 CAACTGAGCTAATAGGCC 542101 >seq1 Length=8341428 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| || Sbjct 7574738 AAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAAC 7574679 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 7574678 CAACTGAGCTAATAGGCC 7574661 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261390926623264