Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq78 129 5e-25 seq1 116 3e-21 seq32 107 2e-18 seq16 105 6e-18 seq39 87.8 2e-12 seq11182 84.2 2e-11 >seq78 Length=1515738 Score = 129 bits (142), Expect = 5e-25 Identities = 173/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| || | || || | |||||||| | || ||||| ||||| | ||| | Sbjct 1185557 TTTGCATTCCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGT 1185616 Query 94833 AATC-GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 |||| || || ||| || |||||| || || ||||| | || || | ||||||| Sbjct 1185617 AATCAGCG---AGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCT 1185673 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | |||||||| || ||||| || || | |||||| ||||| || | ||| |||||||| Sbjct 1185674 GGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAG 1185733 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| || || |||||||| || ||||||||||||||||| ||||| Sbjct 1185734 AACTTTCAACCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | | || | |||||| |||||||| ||||||||||| | Sbjct 1185325 AAAATTTGCATTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATA 1185384 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| | ||| || || ||||| || | || |||| || || Sbjct 1185385 TTGTAGTCCGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGT 1185444 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || |||||||| ||||| || | || || ||||| || ||| || ||| Sbjct 1185445 TGGTCAGGGGGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCA 1185504 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 1185505 GAGCTTTCCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 102 bits (112), Expect = 7e-17 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | |||||||||||||| | ||| ||||||||||| | Sbjct 1184869 AAATATTTGCATTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAAT 1184928 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||| ||| | ||| | ||| |||| || || || | || || ||||| || Sbjct 1184929 GTTATAGTCGGCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTG 1184988 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| || || |||||||| || | ||| || ||||| || | | || || Sbjct 1184989 TTGGTCTGGTGGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATC 1185048 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| | |||||| || | |||||||||||| || ||||| Sbjct 1185049 TGAACTCTCAACTTCCAAAGTGATTG-TTTTCCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 100 bits (110), Expect = 3e-16 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 94742 GATTACTTTATCGCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACC 94801 |||| ||| || ||| | ||| |||| ||| || ||| || | | || | ||| Sbjct 1185070 GATTGTTTTCCCGTTAAAGTTTTCACAAAAATTTGCATTCCACCACGAAGACGGAGCACA 1185129 Query 94802 AAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AATCCTCCA 94859 | ||| | ||| ||||||||||| | ||| |||||| |||||| | ||| || | Sbjct 1185130 AGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCG--GCTAGTGTCCGTCCATCTTCGA 1185187 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || ||||||| || || ||||| || || |||| || || ||||| | || Sbjct 1185188 GCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAA 1185247 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || || ||||| ||| ||||||| | || || || | || || ||||| | Sbjct 1185248 TCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTTTTCC 1185307 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| || || || ||||| Sbjct 1185308 CCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 >seq1 Length=8341428 Score = 116 bits (128), Expect = 3e-21 Identities = 156/212 (74%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | |||||||||||| || | ||| ||||| || || ||| | |||||| Sbjct 3817407 CAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAG-CA-AGAGTTCGTCCATCCTC 3817464 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| |||||| | ||||| | ||||||||| ||||| ||||||||||| || || | Sbjct 3817465 CAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 3817524 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | | || || | | || || || | ||||| || || Sbjct 3817525 GATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTT 3817584 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| |||||||| || ||||| || ||||||| Sbjct 3817585 TCCGGTAAGAGTCTTGACAAAAATTTGCATGC 3817616 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| |||| || | || | ||| | || || |||||||| | ||| || || Sbjct 3816713 CATTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTC 3816772 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | |||||||||||| |||||| | ||||| || || ||||| ||||| Sbjct 3816773 AGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGG 3816832 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| || || | |||||||||||| ||| | | | || || | | || Sbjct 3816833 GGGAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTC 3816892 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | || || || || ||||| | ||| || || || |||||||| Sbjct 3816893 GACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||||||||| | || | ||| || |||||||| ||| Sbjct 3816519 GTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCG 3816578 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||| ||||| ||||| || || ||||| | ||||||||| || Sbjct 3816579 GCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTC 3816638 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| || |||| || || || | |||||||| |||||||| | || Sbjct 3816639 ACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTC 3816698 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 3816699 TTAACGAAGATCTGCAT 3816715 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||| | |||||||||||| || | || |||||| || || ||| | ||| Sbjct 3817633 CACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGG-CA-AGGGTTCGGCCGTCC 3817690 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || ||||| | ||||| | | |||||| || || ||||| ||||| || || Sbjct 3817691 TCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC 3817750 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || || || ||| | | | |||||| | || || |||| ||||| || Sbjct 3817751 TGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 3817810 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| ||||| |||||||||||||||| Sbjct 3817811 TTTCCGGTAAGTGTTTTTACAAAGATCTGCATGC 3817844 >seq32 Length=4239389 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||| |||||||||||| || | || || || | ||| ||||| Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || |||| || | ||| || || || || ||||||||||| ||||| | Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | | || |||| || || |||| ||||||||||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTG 977257 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || |||||||| || ||||| Sbjct 977258 CCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 102 bits (112), Expect = 7e-17 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| || | |||||| | ||| || ||||| || ||||||||||| | | Sbjct 976820 AAAATCTGCATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATG 976879 Query 94829 TTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| ||| | ||| || ||| || ||||| || || |||| || || || || Sbjct 976880 TTATAATCTGCT-AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTG 976938 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || |||||||| || || || | || || || || || | | || || Sbjct 976939 TTGGTCCGGTGGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATC 976998 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 976999 AGAGCTCTCCACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || ||||| ||||||| | ||| || |||||||||||||| || ||||| Sbjct 976675 ATCCTCCAATTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTT 976734 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | ||| ||||| | ||||| || | ||||| Sbjct 976735 GTCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGAT 976794 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||| || |||||||| Sbjct 976795 TGTCTTCCCTGTTAACGTCTTCACGAAAATCTGCAT 976830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAATCC 94855 |||||| || | |||||||||||||| | || |||||| || || ||| | ||| Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCG-GCA-AGCGTTCGGCCGTCC 977362 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || || || ||||||| | || || || || || ||||| || ||||| || Sbjct 977363 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 977422 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| |||||||| || | | | || |||| | || || || | ||||| ||| Sbjct 977423 TGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTT 977482 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| |||||||| || || || ||||| Sbjct 977483 TTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq16 Length=5655878 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | ||| | ||| | || |||||||| || | ||| || ||| Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||| ||||| |||||| | || || || | ||||| || || || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || ||||||||||| | ||| || || | | || || Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACT 2199209 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || | |||||||| || || || || |||||||| |||||||||||| || Sbjct 2199208 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTT 2199158 >seq39 Length=3648736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | | ||| |||||||| | || || |||||||| | ||||||||| | Sbjct 1061503 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTG-C 1061561 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || ||| |||| || || || |||| |||||||| ||||| || |||| Sbjct 1061562 A-AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAG 1061620 Query 94899 GAATACCTTCTTTGTC 94914 |||||||||| ||||| Sbjct 1061621 GAATACCTTCCTTGTC 1061636 >seq11182 Length=218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | |||||| || ||||| ||||| || || ||||| | || |||||||||| Sbjct 204 CAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTGA 145 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| || |||| | ||||| || | ||||||||||| || || || || | Sbjct 144 CGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTTACCCGTCAGGGTCT 85 Query 94992 TCACAAAGATCTGCAT 95007 | || || || ||||| Sbjct 84 TAACGAAAATTTGCAT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448114887071040