Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40 159 5e-35 seq20 156 7e-34 seq4 150 3e-32 >seq40 Length=3610583 Score = 159 bits (176), Expect = 5e-35 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | | ||| | |||||||||| ||||| || || ||||| || || Sbjct 2847897 GCCAAGCGTCATCGGAAAGTCT-TGAGAGATAACATTCAAGGTATTACAAAGCCTGCAAT 2847955 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||||||||| || || ||||| || || ||| | |||||||| | Sbjct 2847956 TCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGAATCAGCGGTTTGATTTATGAAGAAAC 2848015 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | |||||| |||||||||||| ||| ||||| | ||||||| | || || || Sbjct 2848016 CAGAGGTGTTTTAAAGATCTTCCTCGAGAATGTTATTCGTGATGCTGTGACTTACACTGA 2848075 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||| || || |||||||| | || ||||| |||||| | || || Sbjct 2848076 GCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGG 2848135 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||| ||| |||| Sbjct 2848136 AAGGACTTTGTATGGTTTCGGAGGTTA 2848162 Score = 158 bits (174), Expect = 2e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| |||||||| || ||||| ||||| || || ||||||||| | |||||||| Sbjct 2873044 GATAACATTCAAGGAATTACGAAGCCGGCTATTCGCCGACTGGCTCGTAGAGGTGGAGTT 2873103 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | ||| ||| |||||||||| | | | | ||||||||||||||||||| || Sbjct 2873104 AAGCGAATTAGTGGTTTGATCTATGAAGAAACTAGAGGTGTTTTGAAGATCTTCCTCGAG 2873163 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | || || |||||||||| | ||||| || ||| || Sbjct 2873164 AATGTGATTCGTGATGCTGTGACTTACACAGAGCACGCTAGGAGGAAGACGGTGACCGCC 2873223 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| ||||| | || || Sbjct 2873224 ATGGATGTGGTTTATGCTCTGAAAAGGCAGGG 2873255 >seq20 Length=5720136 Score = 156 bits (172), Expect = 7e-34 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || |||||||| || || || ||| |||||||| | ||||| | Sbjct 5620636 GAGATAACATTCAGGGCATTACCAAGCCTGCCATTCGCCGTTTGGCTCGTAGAGGTGGTG 5620577 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| || ||||||| |||||||||||| | | ||||||||||| ||||| Sbjct 5620576 TGAAACGTATCAGTGGATTGATCTATGAAGAGACCAGAGGGGTTTTGAAGATTTTCCTTG 5620517 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | |||||| ||||| || | | ||||| || || Sbjct 5620516 AGAATGTGATTCGTGATGCTGTTACCTATACTGAGCATGCAAGGAGGAAGACGGTGACTG 5620457 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | ||||| | | | |||||||||||| ||| Sbjct 5620456 CTATGGATGTGGTTTATGCTTTGAAAAGGCAAGGAAGGACTTTGTATGGTTTTGGAGGTT 5620397 Query 16698 A 16698 | Sbjct 5620396 A 5620396 Score = 147 bits (162), Expect = 3e-31 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || |||||||| || || || ||| |||||||| | ||||| | Sbjct 5634667 GAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGAGGTGGTG 5634608 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||||||| |||| || || | | | ||||||||||| ||||| Sbjct 5634607 TGAAGCGTATCAGTGGATTGATCTACGAGGAAACCAGAGGGGTTTTGAAGATTTTCCTTG 5634548 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || |||||||||| | ||||| || || Sbjct 5634547 AGAATGTGATTCGTGATGCTGTTACCTACACGGAGCACGCTAGGAGGAAGACGGTGACTG 5634488 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 |||||||| | || ||||| |||||| | || || | | | |||||||||||| Sbjct 5634487 CCATGGATGTGGTTTATGCTTTGAAAAGACAGGGAAGGACCTTGTATGGTTTTGGA 5634432 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || || |||||||| || || || ||| |||||||| | ||||| | Sbjct 5623861 GAGACAACATTCAGGGCATTACCAAGCCCGCCATTCGCCGTTTGGCTCGTAGAGGTGGTG 5623802 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||||||| ||||||| || | | | ||||||||||| |||||| Sbjct 5623801 TGAAGCGTATCAGTGGATTGATCTATGAGGAAACCAGAGGGGTTTTGAAGATTTTCCTCG 5623742 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | ||||||| | || |||||||| || | | | ||||| || || Sbjct 5623741 AAAATGTGATTCGTGATGCTGTTACTTACACCGAGCATGCAAGAAGGAAGACGGTGACTG 5623682 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | || || | | | |||||||||||| ||| Sbjct 5623681 CTATGGATGTTGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTATGGTTTTGGAGGTT 5623622 Query 16698 A 16698 | Sbjct 5623621 A 5623621 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || || || || || ||||| || ||||| ||| |||||||| | ||||| | Sbjct 5614798 GAGACAATATTCAGGGCATTACAAAGCCTGCAATCCGCCGTTTGGCTCGTAGAGGTGGTG 5614739 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||||||| |||||||||| | | | |||||||||||||| || Sbjct 5614738 TGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGGGTTTTGAAGATCTTTCTTG 5614679 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | || |||||||| || | | ||||| || || Sbjct 5614678 AGAATGTGATTCGTGATGCTGTTACTTACACCGAGCATGCAAGGAGGAAGACCGTGACGG 5614619 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||||| | || || | | | ||||| |||||| ||| Sbjct 5614618 CCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGGAGGACTCTGTATGGCTTTGGAGGTT 5614559 Query 16698 AA 16699 || Sbjct 5614558 AA 5614557 >seq4 Length=9149724 Score = 150 bits (166), Expect = 3e-32 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 9097393 GAGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGCGGCG 9097334 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| ||||| | ||| | ||| | |||||||||||| Sbjct 9097333 TCAAGCGTATCAGCGGCCTGATCTACGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCG 9097274 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | || || || || || ||||||||| || |||||||||||| Sbjct 9097273 AAAATGTCATTCGCGACGCCGTCACTTACACTGAGCACGCTCGCCGGAAGACTGTCACCG 9097214 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| |||| | || || || ||| ||| Sbjct 9097213 CCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTCTATACGGCTTCGGAGGTT 9097154 Query 16698 A 16698 | Sbjct 9097153 A 9097153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046432244552