Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq23 237 2e-57 >seq23 Length=5684809 Score = 237 bits (262), Expect = 2e-57 Identities = 572/866 (66%), Gaps = 0/866 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||||||||| || || | ||| || || |||||||| || |||| ||| || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| || || ||||||||| ||||| | | |||||| || | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || |||||||| || ||||| || ||| |||||| || | ||||||||| | ||| Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 || || | ||| || || ||||| || || || || || || | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 || || || |||||| | | | || | | ||| |||||| || ||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 1473436 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || ||||| || |||| ||| | |||||| || ||||| | ||| |||||| Sbjct 1473435 TCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCATT 1473376 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | ||||| ||||| | ||| || || || ||| || || ||||| ||||| || Sbjct 1473375 AACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCG 1473316 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGA 33492 || |||||| || | || | ||| || | | | || || |||||||| Sbjct 1473315 ACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTCCGTGCTATCAATCCACTTCAAC 1473256 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||||||||||||||| || ||||| || | || || || |||| ||| || || Sbjct 1473255 GCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCCGATTC 1473196 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 || ||| | ||| || | |||||| || | | |||||||||||| || ||||||||| Sbjct 1473195 TTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGAATGAATG 1473136 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || ||||| || |||||||| ||||| ||| || || | | || |||||| | Sbjct 1473135 TTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGACTTCTTTC 1473076 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 || ||| | || | || || || || || ||| ||| || || || || | Sbjct 1473075 ATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAAGGCAAGG 1473016 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 || | | || || | ||| ||||| | |||| || ||||| || |||| Sbjct 1473015 ACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGAGGTCTTGT 1472956 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | ||| || ||||| | ||||| || || || || || || ||||| | |||| Sbjct 1472955 GAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACATCTCCCAG 1472896 Query 33853 ATGTCATAATATTGGATTGGGAAAAT 33878 || | | |||||| |||||||| || Sbjct 1472895 ATTTGAGGATATTGAATTGGGAACAT 1472870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622702194866240