Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq78 113 4e-20 seq1 89.7 5e-13 >seq78 Length=1515738 Score = 113 bits (124), Expect = 4e-20 Identities = 172/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 ||||||| | ||||| ||||| ||||| |||||| | ||||| | ||| | ||| | Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGGAAAA-CAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || || | || || |||||| || ||||||||||| || || || Sbjct 1185049 A--GATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGAC 1184992 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| ||| | |||| || || || ||| | ||||||| ||| | | ||||||| Sbjct 1184991 CAACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTAT 1184932 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATA 27002 ||||||||||| ||||| ||| |||| |||| || | ||| | ||||||| ||||| Sbjct 1184931 AACATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGGAATGCAAATA 1184872 Query 27003 T 27003 | Sbjct 1184871 T 1184871 >seq1 Length=8341428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || || || | |||||| | || | || || | Sbjct 3818070 ATGCAAATCTTCGTTAAGACCCTTACAGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 3818011 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || || || || |||||||| || || ||||| Sbjct 3818010 GACACCATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAAGGGATTCCCCCGGATCAG 3817951 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | || |||||| ||||| || |||| ||| | |||||| ||| Sbjct 3817950 CAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 3817891 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || ||| | || || ||||| || ||| | || || Sbjct 3817890 ATTCAGAAAGAGTCAACTCTTCACCTTGTCCTAAGGCTTCGTGGTGG 3817844 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||||||| | || ||||| |||||||| | || | || || | Sbjct 3817842 ATGCAGATCTTTGTAAAAACACTTACCGGAAAGACGATCACCCTTGAGGTGGAGTCTTCC 3817783 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| || || ||||| || || || || || Sbjct 3817782 GACACTATTGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGAATTCCCCCGGACCAG 3817723 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || || || ||||| || || | ||| | | ||| || || Sbjct 3817722 CAACGTCTCATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAAT 3817663 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||||||| |||| || || || Sbjct 3817662 ATACAGAAGGAATCTACTCTCCACCTCGTGCT 3817631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478474142078080