Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 141 2e-28 seq59 93.3 1e-13 >seq23 Length=5684809 Score = 141 bits (156), Expect = 2e-28 Identities = 345/520 (66%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT--TCATTCGCGGAAC 22492 ||||| ||||| ||||||||| |||| ||||| | | | ||| ||||| || || | Sbjct 1473236 AAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGATA--GCACGGACTCATTTGCTGAGC 1473293 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || | ||||||||| || || || |||||||| || || || || | || | Sbjct 1473294 GGATTTTGGCATTTGCTTGCGTCGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTT 1473353 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||| | |||||||||| | ||||| || | ||||| ||||| || || ||| | Sbjct 1473354 TCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTGACGTTCTCAAACGAATTGATTTCAC 1473413 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA--TCATTCA 22670 ||||||| ||||||||| |||||||| ||| || | ||| |||| | | | Sbjct 1473414 GAGATGAAGGTCTTCATTGTGATTTTGCTTGTTTGTTGTAT-----TCATTGTTGAGGAA 1473468 Query 22671 TAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730 ||| | | || || | ||| |||| | || || || | || | Sbjct 1473469 GAAATTGAGTGAGGATCGAGTGAGGCAGATTGTTACGGAGGCCGTGGATATAGAGAGGGA 1473528 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 ||| |||| || || || || || ||| |||| || |||| || | |||||| Sbjct 1473529 ATTCGTTTGTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGAGATTTGATGAGTCA 1473588 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||| ||| ||||||| || ||| | | | || | || || | || ||||| Sbjct 1473589 ATACATTGAATTTGTGGCGGATAGGTTGGTTGGAACATTGGGGTACGAGAAAATCTATAA 1473648 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 || || |||||||| |||||||| | ||||| | |||| ||||| |||||||| Sbjct 1473649 TGTTCAAAACCCATTTGATTGGATGGAGTTGATTTCGTTGCAAGGGAAGACTAATTTCTT 1473708 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || ||||||||||| ||||||||||| ||| ||| ||| Sbjct 1473709 TGAGAAAAGAGTTGGGGAATACCAAAAGGCATCTGTGATG 1473748 >seq59 Length=2086427 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||| |||||||||||||| |||||||| || || ||||||||||| ||||||||||| Sbjct 1296913 TCATGTCAAATGTATCAGCGTTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCG 1296854 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCAtttt 111824 || || || || |||||| | || |||||| || Sbjct 1296853 TCATATGCTCTTCTGACTTGCATGATTGCTCATGTT 1296818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302828175804848