Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq32 113 4e-20 seq78 102 7e-17 >seq32 Length=4239389 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | |||||| | ||||| ||| | Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||| || || || || || || || || ||| Sbjct 976998 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 976939 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | || ||||| || ||||||| ||| | | ||| |||||||| Sbjct 976938 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCT-AGCAGATTATAA 976880 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| ||||| || | ||||||||| | ||||| | || ||| Sbjct 976879 CATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGA 976831 >seq78 Length=1515738 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| ||||| |||||| | || || | ||||| ||| Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGGAAAA-CAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || |||||| || |||||||| || || || || || Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||||| || || |||||| | ||||||| || | | ||| ||||| Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| ||||| || | || || ||||| Sbjct 1184929 CATTCAAAAGGAATCAACTCTCCACTTGGTGTT 1184897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || |||||| | || || ||| | ||||| | || || || | Sbjct 1185336 AATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTC 1185277 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | |||||| |||||| ||||| || || | || || || || Sbjct 1185276 TGACACAATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAGTTCCCCCGGACCA 1185217 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168 ||||| |||| | | |||||||| |||||||||| || || || | |||||| | Sbjct 1185216 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGACGGACAC-TAGCCGATTACA 1185158 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||||||||| ||||| || |||| Sbjct 1185157 ACATTCAAAAGGAATCCACTCTTCA 1185133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || |||||| | || ||| | || || || Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || ||| || || ||||| || ||||| || || Sbjct 1185731 GACACTATCGACAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAG 1185672 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| || || |||||||| || |||| ||| | || ||||| ||| Sbjct 1185671 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTACAAC 1185612 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||||||||| || |||| || || Sbjct 1185611 ATACAAAAAGAATCAACCCTTCACTTGGT 1185583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429771133516920