Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq1 111 1e-19 seq78 98.7 9e-16 seq7 98.7 9e-16 seq32 93.3 4e-14 seq12137 82.4 7e-11 >seq16 Length=5655878 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| | || | |||||| ||||| ||||||||||| ||| | || || Sbjct 2199377 ACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCC 2199318 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| | || ||||||||||||||||| ||||||||||| || Sbjct 2199317 GTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTT 2199258 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | ||||||| | ||| | |||| || | Sbjct 2199257 GTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGAT 2199198 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 2199197 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 2199161 >seq1 Length=8341428 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| | || | || || ||||| || || ||||||||| Sbjct 3817615 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGC 3817674 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| || ||||| || ||| |||| | ||| ||||||||||| || Sbjct 3817675 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGG 3817734 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| || || ||| | | |||| | | | || | ||| |||| ||||| | Sbjct 3817735 AATTCCTTCCTTATC-CTGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCA 3817793 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || ||||| || |||||||| || ||||||||| Sbjct 3817794 CCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCATG 3817843 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| |||||||||||||||||||| || Sbjct 3816717 CCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCA 3816776 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || ||| |||| || | ||||||||| || || Sbjct 3816777 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 3816836 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| ||| || ||| | | || | ||||||| | ||||| Sbjct 3816837 ATGCCTTCCTTATC-TTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGAC 3816895 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| || || || || | ||| || ||||| |||||||| Sbjct 3816896 CTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || ||||||||||| ||| | || || ||||| || |||||||| Sbjct 3817874 GTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCG 3817933 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || || ||||| ||||| || || ||||| || || |||||| |||| Sbjct 3817934 GCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTG 3817993 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | || | ||| | ||| || || || || || Sbjct 3817994 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTC 3818053 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 3818054 TTAACGAAGATTTGCAT 3818070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || || ||||| || ||||||||||| | || || Sbjct 3817400 CGGAGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCA 3817459 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| | |||||| || ||| |||| | | |||||||| || || || ||||| || Sbjct 3817460 TCCTCCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTA 3817519 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | ||||||| |||||| | |||| ||| | Sbjct 3817520 TCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATA 3817579 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || ||||| ||||| || || ||||| |||||| Sbjct 3817580 GTCTTTCCGGTAAGAGTCTTGACAAAAATTTGCATG 3817615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | ||| | |||||||||||| || ||||||||||| Sbjct 3816945 CCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCA 3817004 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||| || || ||| |||| | | ||||||||| || ||| Sbjct 3817005 AGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGG 3817064 Query 131128 -ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 3817065 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAAC 3817124 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTT-AC-GAAAATCTGCAT 131234 || | ||| | ||| || ||||| ||||||||| || ||||| ||||| Sbjct 3817125 CTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq78 Length=1515738 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | || || ||||||||||||||||||||| Sbjct 1185109 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCT 1185168 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||||||||| |||| || | |||||||||||| || Sbjct 1185169 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGA 1185228 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 | ||| || ||||| ||| | | || |||| | || | || || | | || | Sbjct 1185229 ACTCCCTCCTTGTC-TTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAAC 1185287 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || || ||||| |||||||| ||||| Sbjct 1185288 CTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| || || || || | ||| || || ||||| ||||||||||| Sbjct 1185565 CCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCG 1185624 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || ||| | || | | |||||||| |||||| Sbjct 1185625 AGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGG 1185684 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||||| ||| | | || | ||| || | || | Sbjct 1185685 ATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACC 1185744 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 1185745 TCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 >seq7 Length=7328097 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | ||| |||||||| |||||||||||||| Sbjct 2412275 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 2412216 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | |||||||||||||| || || |||| || | |||||| ||||||||| Sbjct 2412215 AGAGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGGG 2412156 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 2412155 ATGCCTTCCTTGTC 2412142 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||||||||| || ||||||||||| | || || |||||||||||||| ||||| ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | || | || || |||||||| || || | || || | ||| |||||||| | Sbjct 976892 -AGAGTCCTGCCA-TCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTG 976949 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || || || ||| || || | | || | ||||| | | ||| | Sbjct 976950 GAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCA 977009 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| || || | ||||| || ||||| ||||| Sbjct 977010 CTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | ||||| ||||| | || || |||||||| || ||||||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || ||||| || || |||| | | ||| ||||| || || Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || ||||| || ||| | | ||| | | | | || | ||||| | | || | Sbjct 977408 ATGCCCTCTTTATCT-TGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCAC 977466 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||||| || || |||||||||||||| || ||||| Sbjct 977467 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq12137 Length=235 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC-TTT 131138 || || |||||||| || ||| |||| || | ||||||||| || |||||||| || ||| Sbjct 234 TCTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTT 175 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | || | || || | ||||| | || | ||| | Sbjct 174 GTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGAT 115 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || ||||| || || || ||||||||||||||| Sbjct 114 GGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCATG 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471827157365760