Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5551 131 1e-25 seq78 122 6e-23 seq5 122 6e-23 seq32 114 9e-21 seq109 113 3e-20 seq1870 109 4e-19 seq16 102 5e-17 seq5842 96.9 2e-15 seq65 96.9 2e-15 seq17 96.9 2e-15 seq41 95.1 8e-15 seq1 89.7 3e-13 seq8 87.8 1e-12 >seq5551 Length=137 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 121 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 62 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 61 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 27 >seq78 Length=1515738 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||||||| | |||| ||||||||||||||||| | Sbjct 1185333 CATT-CCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGT 1185391 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | |||| || | || || | |||||| || || || ||||| | ||||| || | Sbjct 1185392 CCGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAG 1185451 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || ||||| || || || ||||||||| | || ||||| |||| Sbjct 1185452 GGGGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTT 1185511 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || || |||||||| || | |||||||||||| || ||||| Sbjct 1185512 CCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | || || ||| |||||||||||| |||||||| | Sbjct 1184652 TACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGG 1184711 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| |||| | || || ||||||||||| || || || || | ||| || || | | Sbjct 1184712 CCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAG 1184771 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||||| ||| || || | | || ||| || |||| Sbjct 1184772 GGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAA 1184831 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || || || || |||||||| ||||| ||||| ||||| Sbjct 1184832 CCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 1184880 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | ||||||||| ||||||||||| ||||||| Sbjct 1185105 CATT-CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAAT 1185163 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || || | || || || ||||| || | | || || || | Sbjct 1185164 CGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCG 1185223 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| || || || ||||| ||| || || ||||| | || || || |||| Sbjct 1185224 GGGGAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTT 1185283 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||||||||||||||| ||||| | ||||| ||||| || ||||| Sbjct 1185284 CAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| || ||||| ||||||||||| || || || | | | | | Sbjct 1184893 ACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACC 1184952 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || ||||| || || || || || | | ||||| || | |||| |||||||| Sbjct 1184953 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTT 1185012 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| || ||| ||||| | | |||||| ||| |||||||| || || || Sbjct 1185013 ATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGAT 1185072 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| || |||||||| || || ||||| Sbjct 1185073 TGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 >seq5 Length=8749421 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||||||| ||||||||||||||||||||||| |||| || ||| |||| Sbjct 7377317 AAGCCCGCTCCCTTGACTGTGGTTTCGCTAGATAGTAGACAGGGACCGTGGGAATTTCGT 7377258 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7377257 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7377223 >seq32 Length=4239389 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| ||| || || ||||||||||||| ||| || | || || ||||| Sbjct 976628 TGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGC 976687 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || || | |||||||| | || | || |||||||| ||| || Sbjct 976688 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 976747 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || || ||| |||||| ||||| ||||| || || || || || Sbjct 976748 GCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 976807 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| |||||||| Sbjct 976808 AACGTCTTCACGAAAATCTGCAT 976830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGT 38163 ||||||||| || || |||||||| ||||||||||| | ||| |||| ||| Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATC-GGCAA---GCGTTCGGCCGT 977360 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| || || | ||||| |||| || | ||| ||||| | Sbjct 977361 CCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT 977420 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | ||| ||| ||| ||||| | | ||||| ||||| || || | || || | Sbjct 977421 CTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTG 977480 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| || || | ||||| |||||||| ||||| | ||| Sbjct 977481 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTA 977520 >seq109 Length=408487 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| |||||||| |||||||| ||||||| || |||||| | Sbjct 306449 AAGCCCGTTCCCTTGGCTATGGTTTCGTTAGATAGTCGATAGGGATAGTGGAAATCTCAT 306390 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| || |||||||||||||||||| Sbjct 306389 TAATCCATTCATGTGCATCACTAATTAGATGACGA 306355 >seq1870 Length=102 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 ||||||||||||||||| ||||||||| |||| || |||||||||||||| ||||| Sbjct 102 TTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCAT 43 Query 25969 GCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||| Sbjct 42 GCGCGTCACTAATTAGATGACGA 20 >seq16 Length=5655878 Score = 102 bits (112), Expect = 5e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | ||| | ||| | || || || ||||| ||||| ||||| || | Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || |||||||| || || | || || || || | |||| Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || ||| ||| ||||| | || ||||| || |||||| Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACT 2199209 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCT 38329 || | || || || |||||||| | |||||||||||| ||||||||| || | | ||| Sbjct 2199208 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTTGAGAGGCT 2199150 >seq5842 Length=141 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 27 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 86 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 87 GCCCATATTTAGCCTT 102 >seq65 Length=1937772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 |||||||||||||||||| |||||| | | |||||||||||| | | ||||||||| Sbjct 1200185 AAGCCCGTTCCCTTGGCTATGGTTTTGTTGGATAGTAGATAGTGACTGTGGAATCTCGTT 1200244 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||||| |||||| |||||||| || Sbjct 1200245 AATCGATTCATGCGCATCACTATTTAGATGATGA 1200278 >seq17 Length=6318978 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||||||| ||||||| || ||| ||||| | || || ||||| || Sbjct 5234124 AAGCTCGTTCCCTTGGCTATGGTTTCACTGGATTGTAGACAAGGACAATGGAAATCTTGT 5234065 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||| |||||||||||||||||| Sbjct 5234064 TAATCCATTCATGCACGTCACTAATTAGATGAC 5234032 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||| |||||| |||||||||| |||||||||| ||||||||||| Sbjct 5698336 CTCTCTTTTCAAAGTTGTTTTCATCTTTCCCTCATGGTACTTGTTTTCTATCGGTCTCTT 5698277 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 5698276 GCCCATATTTAGCCTT 5698261 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||||||| ||| |||| | ||||||||| |||| || |||||||||||||| Sbjct 5826970 TTCCCTTGGTTGTTGTTTTGTAGGATAGTAGACAGGGATAGTGGGAATCTCGTTAATCCC 5827029 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| ||||||| ||||||||| || Sbjct 5827030 TTCATGCACGTCACTGATTAGATGATGA 5827057 >seq41 Length=3648464 Score = 95.1 bits (104), Expect = 8e-15 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| || | ||| Sbjct 1717396 TTCAAAGTCCTTTTCATCTTTCCCTCTCGGTACTTGTTTGCTATCGGTCTCTCGCTCATA 1717455 Query 20014 TTTAGCCTTA 20023 |||||||||| Sbjct 1717456 TTTAGCCTTA 1717465 >seq1 Length=8341428 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || |||| ||| | || | ||||| ||| |||||||||||| ||||| | Sbjct 3816713 CATT-CCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGT 3816771 Query 38146 CAGACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| ||| | | || | || || | || |||||||| || || | | || || || Sbjct 3816772 CAG-CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCT 3816830 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | ||| | |||||| || || ||||||| ||| || || | | ||||| || Sbjct 3816831 GGGGGAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTC 3816890 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | ||||| || || || ||||| || || |||||||||||||| Sbjct 3816891 TCGACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 >seq8 Length=7373812 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||| ||| |||||||| ||||||||||| |||||||||||| | Sbjct 7371175 CTCTCTTTTCAAAGTCCTTATCATCTTTCCCTTGCGGTACTTGTTTGCTATCGGTCTCTC 7371234 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 7371235 GCCCATATTTAGCCTT 7371250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334818758634584