Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq78 136 3e-27 seq32 131 1e-25 seq1 114 1e-20 seq12137 82.4 7e-11 >seq78 Length=1515738 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || | || |||||| ||||||| | || ||||| || Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || ||||| ||||| || ||| || ||||| || ||||| |||||||| Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | ||||| || || |||||| | ||||||| || ||| ||| || ||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| | ||||| ||||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTGCT 1185352 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| || || | |||||| | || || ||| || Sbjct 1184881 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTC 1184822 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || | ||| |||||| ||||| || || || || ||||||| Sbjct 1184821 AGACACCATTGA-TAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 1184763 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | ||||| || || |||||||| || |||| || || ||| |||||||| Sbjct 1184762 AGCAAAGACTCATTTTCGCTGGAAAACAATTGGAGGATGGACGTACATTGGCCGATTACA 1184703 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | |||||||| || ||||| || || Sbjct 1184702 ACATTCAAAAGGAGTCCACCCTCCA 1184678 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||||| || || ||| | ||||| | ||||| ||| || Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGGAAAA-CAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | ||| | || | ||| || ||||||||||| ||||| |||| Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAA-GATAAAGAAGGGATCCCACCAGACC 1184991 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | ||||| || || || ||||| ||||||| | | ||| | | ||| || | Sbjct 1184990 AACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATA 1184931 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | |||||||| ||||| || || || || ||| | | || | ||||||| Sbjct 1184930 ACATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGGAA 1184880 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | ||||| ||| | || || | || || || ||| Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 25059 GACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || |||| ||| || || ||||| || || || ||| Sbjct 1185731 GACACTATCGA--CAATGTAAAGGCCAAAATTCAA-GATAAGGAAGGAATCCCTCCAGAC 1185675 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||| || || || ||| | || |||| ||| || | | |||||| Sbjct 1185674 CAGCAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTAC 1185615 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || || || || || Sbjct 1185614 AACATACAAAAAGAATCAACCCTTCACTTGGTTCT 1185580 >seq32 Length=4239389 Score = 131 bits (144), Expect = 1e-25 Identities = 167/226 (74%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||||||||| ||||| ||| | || || ||| | ||||| |||| ||||| Sbjct 977519 AACAGATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAA 977460 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||||| || || || || || | ||||| | ||| || ||||| || ||||||| Sbjct 977459 GCTCTGATACAATTGA--CAATGTTAAGGCAAAGATTCAA-GATAAAGAGGGCATTCCAC 977403 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||||||| || |||| ||||| || || ||| | || || | || || | | || Sbjct 977402 CCGACCAACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCG 977343 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 977342 ATTACAATATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGACT 977297 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| ||||||| | || |||||| ||| Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| ||||| ||||| ||||| ||||||||||||| Sbjct 977226 GATACCATTGA--CAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACC 977169 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | |||||||||| || || || | || || | || ||| | | || |||| Sbjct 977168 AACAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTACA 977109 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || ||||| || || ||||| || || Sbjct 977108 ATATTCAGAAGGAATCTACTCTGCATTTGGTTCT 977075 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || ||| | || || | ||||||||| ||| Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || |||| || ||| || || || || |||||||| |||||| Sbjct 976998 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 976939 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | ||||||| | ||| | | ||||| || Sbjct 976938 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTAGCAGATTATAAC 976879 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| ||| | ||||||||||| Sbjct 976878 ATTCAAAAGGAATCAACGTTGCATTTAGTGCT 976847 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| || || || || | |||||| | ||||| || || Sbjct 976831 AATGCAGATTTTCGTGAAGACGTTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTC 976772 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| ||||| | || | ||| |||||||| |||||||| || || | Sbjct 976771 AGACACCATCGACAATGTGAAGGCGAAGATTCAA-GACAAAGAGGGGATTCCTCCAGATC 976713 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || ||||| || || ||||| || |||| ||| || ||| ||||||| Sbjct 976712 AACAGAGACTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGGACATTGGCTGATTACA 976653 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| ||||| || || Sbjct 976652 ATATCCAGAAAGAGTCCACCCTCCA 976628 >seq1 Length=8341428 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | || |||||||| || Sbjct 3818070 ATGCAAATCTTCGTTAAGACCCTTACAGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 3818011 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| || || ||||||||||| || || || Sbjct 3818010 GACACCATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAAGGGATTCCCCCGGATCAG 3817951 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||| ||| | || |||| || ||| | | ||| ||||| Sbjct 3817950 CAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 3817891 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| ||||| || || || || | || |||||||| Sbjct 3817890 ATTCAGAAAGAGTCAACTCTTCACCTTGTCCTAAGGCT 3817853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | ||||| || | ||||| | || |||||||| || Sbjct 3817842 ATGCAGATCTTTGTAAAAACACTTACCGGAAAGACGATCACCCTTGAGGTGGAGTCTTCC 3817783 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | | |||| || | ||| || || ||||| ||||| || ||||| Sbjct 3817782 GACACTATTGACAACGTTAAAGCCAAGATTCAG-GATAAGGAAGGAATTCCCCCGGACCA 3817724 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || || ||| | || || | || || | | ||||||||| Sbjct 3817723 GCAACGTCTCATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 3817664 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || ||||| || || || | ||||| |||| Sbjct 3817663 TATACAGAAGGAATCTACTCTCCACCTCGTGCTCCGGCT 3817625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||||||||| || || | || || |||| || ||| || Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTCC 3816884 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | | ||||||| ||| || || ||||| ||||| || ||||| Sbjct 3816883 GATACCATTGACAACGTTAAGGCAAAAATTCA-AGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || || | || |||| | ||| | | || ||||| Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || ||||| || || | || || | || || ||||||| Sbjct 3816764 CATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGAGGGGAGGAA 3816715 >seq12137 Length=235 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || || ||||||||| Sbjct 79 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTTGAGGTTGAGTCGTCT 138 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGACCA 25117 ||||| || || ||||| || ||| ||||||| |||| || ||||| ||||| Sbjct 139 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAAGGAGGGAATCCCACCAGACCA 198 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||| || | || || || || || || | |||||| Sbjct 199 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTTGAAGAT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433161832795160