Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq23 232 7e-56 seq67 96.9 4e-15 seq11 91.5 2e-13 seq1 91.5 2e-13 seq45 89.7 6e-13 seq25 89.7 6e-13 seq14 89.7 6e-13 seq26 86.0 7e-12 seq5 86.0 7e-12 seq30 82.4 8e-11 seq6 82.4 8e-11 >seq23 Length=5684809 Score = 232 bits (256), Expect = 7e-56 Identities = 595/893 (67%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||||||| |||| ||||||||||| ||||| |||| ||| || ||| | Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCA-ACTCGTACAA 92919 | || | | | ||| || | | ||||| ||||| | | | | | | ||| Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGA--TTTTCTCGTACCCCAATGTTCCAA 1473618 Query 92920 T-AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 || ||||| || |||||||| ||||| ||| ||||||||| | ||||||||| | || Sbjct 1473617 CCAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAA 1473558 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 || || || | ||| || | ||| || |||| || | ||||| || | | | Sbjct 1473557 GAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAA 1473498 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG-TACATTAAGCACGCA 93097 | | | |||| | | | | ||| | | | ||| |||| || || ||| Sbjct 1473497 TCTGCCTCACTCGA-TCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCA 1473439 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || ||| | |||||| |||||||| ||||| || || ||| || || || || Sbjct 1473438 AAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGC 1473379 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || ||||| || | ||| || || || ||| |||||||| || || || || || Sbjct 1473378 ATTAACCCACGTTTTTTCAACCAGAAAATAGA-GCAGAAACTACCTGAGAAGAAAATTCC 1473320 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || ||| |||||||||| ||| || || ||||| || | | || ||||| Sbjct 1473319 CTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAA---TGAGTCCGTGCTATCAATCCA 1473263 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || || ||||||||||| || ||||| | ||| || | || || ||||| | ||| || Sbjct 1473262 CTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAG 1473203 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 || ||| ||||| || || || || | | ||| |||||| ||||| Sbjct 1473202 CCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAGA 1473143 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | ||||| || |||||| ||||| ||||| ||| ||||| | || || || Sbjct 1473142 ATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGAC 1473083 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||| || | | | || || || || |||||||| || || || || || Sbjct 1473082 TTCTTTCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGAA 1473023 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAATCGGATA 93575 || | | | | || || |||||||| || ||||| |||||||| | | Sbjct 1473022 GGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGA-ATCCCAATGGCGGA 1472964 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 | |||| ||| |||||||| |||||| | ||||| || || ||| ||||| ||||||| Sbjct 1472963 GGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACA 1472904 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 | ||||| || | ||||||||||||| || ||| || |||| |||||| Sbjct 1472903 TCTCCCAGATTTGAGGATATTGAATTGGGAACATGCAGAAGCGATCGGGGTTA 1472851 >seq67 Length=1739551 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 126421 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 126480 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| |||||||||| ||||| Sbjct 126481 TGGGTTCAAATCCCACTTCTGACAAATT-TTATT 126513 >seq11 Length=6895065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 5893194 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 5893137 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| ||| |||| Sbjct 5893136 GCGTGGGTTCAAATCCCACTTCTGACATTTTAATATT 5893100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2602136 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2602079 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 2602078 TTCAAATCCCACAGCTGTCAATTTTTT 2602052 >seq1 Length=8341428 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 7/94 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 4752018 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 4751961 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| ||||||| Sbjct 4751960 GCGTGGGTTCAAATCCCACTTCTGAC-AATTATT 4751928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2278211 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2278268 Query 126328 TTCGAACCCCACACCTGAC-AAATTAT 126353 ||| || |||||| ||| | ||||||| Sbjct 2278269 TTCAAATCCCACAGCTGTCAAAATTAT 2278295 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1502767 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1502824 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||| || |||||| ||| ||| ||| || || Sbjct 1502825 GGGTTCAAATCCCACAGCTGTCAATATTCTTCTT 1502858 >seq45 Length=3181705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 884223 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 884282 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 884283 GTGGGTTCAAATCCCACTTCTGACAA 884308 >seq25 Length=4677790 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 3697580 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 3697639 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| ||| ||||| Sbjct 3697640 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTATT 3697672 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 2456108 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 2456165 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 2456166 CGTGGGTTCAAATCCCACTTCTGACAA 2456192 >seq14 Length=6093421 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 1937895 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 1937838 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| |||| ||||| ||||| Sbjct 1937837 CGTGGGTTCAAATCCCACTTCTGATAAATTTTTATT 1937802 >seq26 Length=4561837 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 3242788 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 3242729 Query 126323 GTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||||| ||| || || |||| | ||| Sbjct 3242728 GTGGGTTCAAATCCCACTTCTGACAACATTCTTTTTCTAATTCTAGTT 3242681 >seq5 Length=8749421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7272166 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7272223 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 7272224 GCGTGGGTTCAAATCCCACTTCTGACA 7272250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 7/98 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 8133334 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 8133277 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||||||| || ||||| ||||||| ||| | ||| Sbjct 8133276 GCGTGGGTTCAAATCCCACTTCTGACAATATTTTCATT 8133239 >seq30 Length=4278129 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/109 (78%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 126255 TTCTATTTACA----GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT 126310 |||||||| || | ||| |||||||||||||||||||||||||||||| | |||||| Sbjct 133625 TTCTATTTTCAACAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT 133566 Query 126311 TCCCTCGGGAGCGTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 || | |||||||||| || |||||| ||| || |||| || || Sbjct 133565 --CCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCATCAATTTTTCTT 133519 >seq6 Length=8244739 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 ||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1614384 GTCAGAATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1614325 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1614324 TGGGTTCAAATCCCACTTCTGACA 1614301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556641786647360