Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq32 116 3e-21 seq78 104 2e-17 >seq32 Length=4239389 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | ||||| | || |||||||| || ||| | || |||| | | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| ||||||||||| | || ||||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || ||||| || || ||| | |||||||||||| Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 977335 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||| || ||| |||| Sbjct 977334 ATCCAAAAGGAATCTACACTCCATTTGGT 977306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || ||||||||||| || | || ||| | Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||||| || || || ||| | ||||| || Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTG---AC 977170 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||||||||| |||||||| || || || || || ||| | || || ||| Sbjct 977169 CAACAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTAC 977110 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||||||| ||| |||| | ||| | || || || Sbjct 977109 AATATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGG 977060 >seq78 Length=1515738 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| |||||||| ||||| || || ||||| || | Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || ||||| || ||| |||||||| || | || | |||| Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||| | || || ||||| || ||| | |||||| | ||| | ||||| || || Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| ||||| || |||| || ||| | || |||||| Sbjct 1184929 CATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGGA 1184881 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || |||||||| ||| | || |||| | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || |||||||||||| | || |||| Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || || ||||| |||||||| |||||| ||| |||| || ||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| |||||||| ||| | ||| |||| | ||| | || || ||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTGCTTCGTCTTCGTGGTGGA 1185336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357987470778256