Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq32 122 7e-23 seq78 104 2e-17 >seq1 Length=8341428 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || || ||||||||| | || || || |||||||| || ||| Sbjct 3817646 GTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 3817705 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || |||||||| ||||| ||||| || || |||||| ||| Sbjct 3817706 GCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTTA 3817765 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| || || || || | ||| | ||| || ||||| || ||| Sbjct 3817766 ACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTT 3817825 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 3817826 TTTACAAAGATCTGCATG 3817843 Score = 107 bits (118), Expect = 2e-18 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | || || || || || ||||||||||| Sbjct 3816942 ATACCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCT 3817001 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTC-CGG 114271 | ||| || |||||| | ||||| |||||| |||| || | ||| ||||| || Sbjct 3817002 GCAAGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGG 3817061 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| |||||| || | | |||| ||||| | || || Sbjct 3817062 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTC 3817121 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT-AC-AAAAATCTGCAT 114382 || |||| ||| | || || ||||| ||||||||| || |||||| ||||| Sbjct 3817122 AACCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || ||||||||||| | ||| || ||| || | || || || Sbjct 3817418 GTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTGCTTTCCG 3817477 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | || ||||| || ||||| ||||| || || ||||| || Sbjct 3817478 GCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTG 3817537 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| |||| ||| || || || | ||| | || || ||||| ||||| Sbjct 3817538 ACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTC 3817597 Query 114366 TTTACAAAAATCTGCATG 114383 || |||||||| |||||| Sbjct 3817598 TTGACAAAAATTTGCATG 3817615 >seq32 Length=4239389 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || ||||| | || ||||| | |||||||| ||||| || ||||||||| Sbjct 977285 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCG 977344 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || |||||||| |||||||| |||| || | ||||||||| || Sbjct 977345 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 977404 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| ||||| || ||||||| || | | |||| || || | | ||| Sbjct 977405 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCC 977464 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || ||||||||||| || || ||||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 |||||||| | ||| ||||| ||||||||||| ||||| ||| | ||| | |||||| Sbjct 976850 ACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT-AGAGTCCTGCCATCTTC 976908 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || |||||||| | || | | |||||||||||| ||||| || || || || Sbjct 976909 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTG 976968 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | |||| || || | | || || |||| ||| | ||||| Sbjct 976969 GATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTT 977028 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||||| |||||||| ||||| Sbjct 977029 CCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 >seq78 Length=1515738 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | || ||||| |||||||| ||||| || Sbjct 1185334 ATTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCC 1185393 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||||||||||||||||||| | || || | ||||||||| || Sbjct 1185394 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGG 1185453 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || ||||| || | | || | ||| || | | ||| Sbjct 1185454 GGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 1185513 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || || ||||| || || || ||||| Sbjct 1185514 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||||| | | ||| || || | || ||||||||||| ||||||||||| Sbjct 1185562 ATTCCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCA 1185621 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| |||||||| || |||||| | || || | || ||||| ||| Sbjct 1185622 GCGAGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGA 1185681 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || |||| | || | ||||| | ||| Sbjct 1185682 GGGATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCA 1185741 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||| |||||||| ||||| || ||||| Sbjct 1185742 ACCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 |||||||| ||||| || | | || | || | || || || ||||||||||||||| Sbjct 1184648 CAAATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAA 1184707 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||| || ||||| ||| || | |||||| |||||| | ||||| | || ||||| Sbjct 1184708 TCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCA 1184767 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGA 114328 ||||| || || || ||||| || ||| | ||| | | |||| |||||| | | Sbjct 1184768 GGAGGGATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGTTATCAATGGTGTCTGAGCT 1184826 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | || || || |||| || || ||||| || ||||| Sbjct 1184827 CTCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 1184880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | || ||||| ||||||||||| || ||| Sbjct 1184879 ATTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1184938 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | | |||||| | ||| ||||||||| | || | | ||||||||| || Sbjct 1184939 GCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGT 1184998 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || |||||| || | | |||| || || | || Sbjct 1184999 GGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCA 1185058 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || | |||||| |||||||| ||||| Sbjct 1185059 ACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419973292111968