Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq32 127 5e-24 seq16 114 3e-20 seq78 104 6e-17 seq27 95.1 3e-14 seq5 89.7 1e-12 seq39 84.2 5e-11 >seq1 Length=8341428 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || ||||| || | || ||| || || ||||| || | Sbjct 3817612 CATG-CCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAAT 3817670 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || ||||| || | ||| ||||| |||||||| ||||| || || | Sbjct 3817671 CGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGG---T 3817727 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| |||||||| |||||||| || || ||||| ||||| || |||| ||| | Sbjct 3817728 CCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAG 3817787 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||||||||| ||||| || || || || || |||||||| Sbjct 3817788 ACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Score = 131 bits (144), Expect = 4e-25 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 288255 GAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCG 288314 ||||| || || ||||||| || ||| || ||||| || || || || || || || Sbjct 3817396 GAGTCGGAGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCG 3817455 Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCC 288371 ||| || || || || ||||| |||||||| || | || || |||||| || || Sbjct 3817456 TCCATCCTCCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGG---TCTGGGGGAATACC 3817512 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||||||||| || || || ||||| || || | |||| || || || ||||| Sbjct 3817513 TTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAG 3817572 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 3817573 GGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAAATTTGCAT 3817614 Score = 120 bits (132), Expect = 7e-22 Identities = 159/218 (73%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || ||||| || || ||||| || || || | ||| || Sbjct 3816732 AGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 3816791 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || ||||| |||||||||| | ||| || |||||| || ||||| ||| Sbjct 3816792 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGG---TCTGGGGGAATGCCTTCCTTA 3816848 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTG 288435 || || ||||| || || ||||| || || | |||| ||| || || ||||| || Sbjct 3816849 TCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTC---TCGACCTCGAGGGTA 3816905 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||| ||||||||||||||||||||| Sbjct 3816906 ATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || || || |||| || ||||| || || || |||| Sbjct 3817840 CATG-CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGT 3817898 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || || || | ||| || || |||||||||| || || ||| | Sbjct 3817899 CGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGA---T 3817955 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| |||||||||||||| || || ||||| || || | ||| | Sbjct 3817956 CCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAG 3818015 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 3818016 ACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || || || || || ||||| || || Sbjct 3816489 CCACCACGGAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCA 3816548 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||||| || || ||||||| | ||| || ||| Sbjct 3816549 AGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 3816608 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || || ||||| ||||| ||||||||||| || || | ||| ||| || Sbjct 3816609 ATTCCCTCCTTGTCCTGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTC---TCC 3816665 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 3816666 ACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCATT 3816716 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || ||||| | || || || ||||| || || || || Sbjct 3816945 CCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCA 3817004 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || ||||| || |||||||| || | ||| || |||||| Sbjct 3817005 AGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGG---TCTGGG 3817061 Query 288367 ----ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || ||||| || || || |||||||| || || | || || || Sbjct 3817062 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTC 3817121 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAG-TCTTGAC-GAATATCTGCAT 288473 || || | ||||| ||||||||||| |||| | ||||| || || ||||| Sbjct 3817122 AACCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq32 Length=4239389 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| |||||||| || | ||| | || ||| ||||||||||| || ||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || | ||| || || || ||||| || | |||||| ||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || |||||||| || || || || || || || || || | ||| ||| ||| Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCT---TTCC 977464 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || || || ||||| || |||||||| ||||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq16 Length=5655878 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || |||||||| || || || ||||| || | || ||||| ||||| Sbjct 2199353 TTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 2199294 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||| || ||||||||||| || |||||||| || || || || || Sbjct 2199293 AATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 2199234 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | ||| |||| || |||||||| ||||| ||||| || || || || || Sbjct 2199233 GTCGATGGTATCGGAGCTC---TCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTT 2199177 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2199176 CACGAAGATCTGCAT 2199162 >seq78 Length=1515738 Score = 104 bits (114), Expect = 6e-17 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| || ||||| || || || ||||| Sbjct 1184654 CCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 1184713 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| || || ||||||||||| ||||| || || | |||| | || | Sbjct 1184714 AATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGA--- 1184770 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || || ||||||||||| || || ||||| || || | || |||| Sbjct 1184771 GGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTC--- 1184827 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | ||||| ||||| || |||| ||||| || ||||| |||||| Sbjct 1184828 TCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/195 (72%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || ||||||||||| || || | || ||||| ||||| || || ||||| Sbjct 1184917 TTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAA 1184976 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | |||||| |||||| ||||||||||| || || || || || || || Sbjct 1184977 AATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATT 1185036 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || || | ||| ||||| | ||||| || ||||| || | ||| || Sbjct 1185037 ATCAATTGTAT--CTGAACTCTCAACTTCCAAAGTGATTGTTTTCCC-GTTAAAGTTTTC 1185093 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 1185094 ACAAAAATTTGCATT 1185108 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || || ||||| || || || || || | ||| ||||| ||||| Sbjct 1185600 TTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAA 1185659 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | || || ||||| ||||||||| ||||| || ||||| || || || Sbjct 1185660 AATAAGCCTTTGCTGG---TCTGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTTAC 1185716 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || ||| || || || || || || || ||||| ||||| || Sbjct 1185717 ATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTT 1185776 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 1185777 CACAAAGATTTGCAT 1185791 >seq27 Length=4428067 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | |||||| || || ||||| Sbjct 435750 CCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCGATGGTATCGCTGGACTCAACTTCC 435809 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT--TATGT 288478 | ||| ||||||||||| || || || || ||||| |||||||| ||||| Sbjct 435810 AACGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCCTATGT 435860 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | ||||| || || ||||| Sbjct 461612 CCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCGATGGTGTCGCTGGACTCAACTTCC 461671 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||||||||| || || || || ||||| |||||||| Sbjct 461672 AACGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 461715 >seq5 Length=8749421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| || || || || || || || | ||||| || || ||||| Sbjct 8654021 CCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCGCTGGACTCAACTTCC 8654080 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| || |||||||| || || || |||||||| ||||||||| | ||| || Sbjct 8654081 AGCGTAATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATTTTCTTAATC 8654134 >seq39 Length=3648736 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439 ||||||| || ||||| || || || || | |||||| || |||||||||||||||| Sbjct 1062261 CCTGGATCTTGGCTTTGACATTATCGATGGTATCGCTGCTCTCGACTTCGAGCGTGATCG 1062320 Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| || || || ||||| || |||||||| Sbjct 1062321 TCTTCCCAGTTAGGGTTTTGACAAAGATCTGCAT 1062354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179178842972592