Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq32 122 9e-23 seq1 105 7e-18 seq78 100 3e-16 seq16 96.9 4e-15 seq7 84.2 2e-11 >seq32 Length=4239389 Score = 122 bits (134), Expect = 9e-23 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || ||||| ||||||||||| ||||| ||||||||| |||| || Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || |||| ||| ||||| | ||| | | |||||||| Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 ||||| |||| | | | || || ||| ||||| || | ||||||||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTC---TCCACCTCAAGAGTGATGGTT 977254 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| ||||| |||||||| Sbjct 977255 TTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 109 bits (120), Expect = 6e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | ||| |||||||| ||||||||||| || || || || |||| || Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 977364 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || || || | ||| ||||||| ||| | || ||| || | | | Sbjct 977365 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 977423 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | |||| | | | | | | | || || ||| |||||| |||| ||||| | Sbjct 977424 GAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCT---TTCCACCTCGAGGGTGATTG 977480 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || ||||| || |||||||| Sbjct 977481 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq1 Length=8341428 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| || || || || |||| || || ||||| |||||||| Sbjct 3817652 TCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 3817711 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | ||||| ||| ||| | || | || | ||| Sbjct 3817712 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC-TGAATCTTGGCTTTAACGTT 3817770 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || ||||| || | ||||| || || || || || || ||||| Sbjct 3817771 GTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTAC 3817830 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 3817831 AAAGATCTGCAT 3817842 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| || || ||||| || | || || || ||||| || ||||| Sbjct 3817879 CTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 3817938 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||| ||||| || | || | | ||||| ||| |||||| |||| ||| Sbjct 3817939 GATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGA-CGT 3817997 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || ||||| || | |||||||| ||||| || || ||||| | Sbjct 3817998 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAA 3818057 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 3818058 CGAAGATTTGCAT 3818070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||||||||| ||||| || | || || | |||||| || ||||| Sbjct 3817424 TCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCGAAG 3817483 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| |||||||| | || | | ||||| ||| ||| || |||| | Sbjct 3817484 ATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 3817543 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || ||| || ||||| |||| ||||| || || || || || ||||| ||| Sbjct 3817544 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 3817603 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 3817604 AAAATTTGCAT 3817614 >seq78 Length=1515738 Score = 100 bits (110), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||||||||| ||| ||||||||||||||||| || |||| |||||| | Sbjct 1185348 ACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCC 1185407 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||||||||| || || | ||| ||||| | || | | ||| || Sbjct 1185408 ATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTT 1185467 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || || | | | | || || ||| |||||| || | || Sbjct 1185468 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---TTCCACCTCTAAGGT 1185524 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||||| || || || || || || |||||||||||| Sbjct 1185525 GATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||| || || ||||| | || || |||||||| || || || Sbjct 1185145 TCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAG 1185204 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | | ||||||||| | || || | |||||||| | ||| | || | ||||| | Sbjct 1185205 ATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGT-CTTGAATCTTAGCTTTGACATT 1185263 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || || | || || ||||| ||||| || || || Sbjct 1185264 ATCGATTGTGTCAGAGCT---TTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTT 1185320 Query 42194 TACAAAGATTTGCATTTTCACGCCGAATACAATGCAC 42230 || || ||||||| || ||| |||| || | |||| Sbjct 1185321 GACGAAAATTTGCA-TTCCACCACGAAGACGAAGCAC 1185356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| |||| || || | || || | || || |||||||| Sbjct 1184689 CTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAA 1184748 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| |||||||| | || | | |||||||||| |||||| || | | Sbjct 1184749 AATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTT 1184808 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | ||||| || || || || | ||||| Sbjct 1184809 ATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTT 1184865 Query 42194 TACAAAGATTTGCATT 42209 ||||| ||||||||| Sbjct 1184866 CACAAATATTTGCATT 1184881 >seq16 Length=5655878 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | || | || ||||| ||||| ||||| || || Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| ||| ||| |||| | | | || || |||| || Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TCA 2199212 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| || |||||||| || || || ||||| ||||| Sbjct 2199211 ACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq7 Length=7328097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||||| | | || ||||||||||| ||||| || Sbjct 2412240 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAA 2412181 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || | | |||||| || | || | || ||||||||| ||| ||| Sbjct 2412180 GATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC-TGAATTT 2412134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542999154405760