Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq32 147 2e-30 seq78 123 2e-23 seq1 123 2e-23 seq16 118 1e-21 >seq32 Length=4239389 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||||| ||||||| ||| | ||| ||||| ||||||||||| |||||||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||||||||| || ||| |||| | || ||| ||||| || ||| Sbjct 976892 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 976951 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | | || ||||| ||| || | ||||||| | ||||| Sbjct 976952 ATACCCTCCTTATCTTGGA-TCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || || || ||||| ||||| || ||||||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||||||||| | ||| | || ||||| ||||| || |||||||| || Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| ||||| ||||| || ||| | || |||| ||| |||||||| ||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || ||| ||| ||| || | ||||||| | ||||| Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACC 977467 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| || | |||||||||||| |||||||| Sbjct 977468 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| || ||||| ||||| || |||| || ||| |||| Sbjct 977074 AAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTC 977133 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| || ||| |||| || | ||| ||||| || ||||| ||||| || || Sbjct 977134 CTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTC 977193 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||||||||| ||| ||| || | |||||| ||||| || | ||| | ||| Sbjct 977194 TTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGT 977253 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || |||||||| Sbjct 977254 TTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 >seq78 Length=1515738 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| ||||||||||| |||| ||| || | || ||||| ||| Sbjct 1185589 TGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCAAGTTGC 1185648 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| |||| |||||||| ||||| |||||||| || ||||| ||||| Sbjct 1185649 TTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTG 1185708 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||| || | || ||| || || || | |||| || || ||||| Sbjct 1185709 GCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTTTCCGGTG 1185768 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | |||||| || || |||||||| Sbjct 1185769 AGAGTTTTCACAAAGATTTGCAT 1185791 Score = 122 bits (134), Expect = 9e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || ||||| ||||||||||||||||| || | || || | ||| Sbjct 1185124 AGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCT 1185183 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || | || ||||||||| || |||| ||| || || ||| Sbjct 1185184 TCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCT 1185243 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | ||| ||| | || || |||| || | || Sbjct 1185244 TG-AATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGT 1185302 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||||| ||||||||||||||| Sbjct 1185303 TTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||||||||| || || || | || | | ||||| | ||||| || Sbjct 1184912 GTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCTTCCAATTGCTTACCA 1184971 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | | ||| ||||| || || || |||||||| ||||| || || ||| Sbjct 1184972 GCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGAATCTTAGCCTTA 1185031 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| || ||||| | ||| | || || || || |||||| Sbjct 1185032 ACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGATTGT-TTTCCCGTTAAAGTT 1185090 Query 64427 TTTACGAAAATTTGCATT 64444 || || |||||||||||| Sbjct 1185091 TTCACAAAAATTTGCATT 1185108 >seq1 Length=8341428 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||| || || |||||||| ||||| || | ||| | | || Sbjct 3816503 AAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATC 3816562 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||| || |||||| | || | || ||||||||| || |||||||| || || || Sbjct 3816563 TTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 3816622 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||||||||| || || | ||||||| ||||| || | ||| | || Sbjct 3816623 CTG-AATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGG 3816681 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || ||||| || || ||||| || |||||| Sbjct 3816682 TCTTTCCAGTCAAGGTCTTAACGAAGATCTGCATT 3816716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || |||||||||||||| || || | || | | || Sbjct 3816732 AGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 3816791 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | || ||||||||| || ||||| ||||| || ||| Sbjct 3816792 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCT 3816851 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||| || || | ||||| | || || || | || | ||| Sbjct 3816852 TGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTC 3816911 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || ||||| || ||||| Sbjct 3816912 TTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || || ||||||||||| || | || || | || Sbjct 3817403 AGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCC 3817462 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || | |||||||| || ||||| ||||| || || Sbjct 3817463 TCCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCC 3817522 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || ||||| || | || | ||| Sbjct 3817523 TGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTC 3817582 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || || ||||||||||| Sbjct 3817583 TTTCCGGTAAGAGTCTTGACAAAAATTTGCAT 3817614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || || |||||||| || | ||| || |||| Sbjct 3817631 AGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCC 3817690 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || || | ||||| || |||||||| || ||||||||||| || || Sbjct 3817691 TCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC 3817750 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || || | || || | ||||| || | || | || Sbjct 3817751 TG-AATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 3817809 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | |||||||| || || ||||| Sbjct 3817810 CTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || || |||| || || ||||| ||||||||||| || || | || || | Sbjct 3817856 CTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCA 3817915 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||| ||||||||||| | || | || ||||| || || ||||| ||||| || Sbjct 3817916 TCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTA 3817975 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || ||||| ||| || || | || || | ||||| || | || | | Sbjct 3817976 TCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATG 3818035 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | || || ||||| |||||||| Sbjct 3818036 GTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | ||||| || || || |||||||||||||| | || || | ||||| Sbjct 3816962 CACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCTTC 3817021 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTT 64352 | ||| || || || | || || | ||||||||| ||| ||||| ||||| || || | Sbjct 3817022 CAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCTTGTCCT 3817081 Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | || || ||| || || | ||| ||| | || || || | || | ||||| Sbjct 3817082 GAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGATGGTCT 3817141 Query 64413 TGCCGGTCAAAGTTTTT-AC-GAAAATTTGCAT 64443 | ||||| | ||||||| || ||||||||||| Sbjct 3817142 TCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq16 Length=5655878 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | |||||||| || ||||||||||| || || | || || |||| Sbjct 2199374 AAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTC 2199315 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| ||||| |||| | ||||||||||| || || |||||||| || || Sbjct 2199314 CTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTC 2199255 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| || | ||||| | || ||||| | ||| | ||| Sbjct 2199254 CTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGT 2199195 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||||| ||||| || ||||| Sbjct 2199194 CTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499448289700160