Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq16 100 3e-16 seq32 91.5 1e-13 seq78 86.0 6e-12 >seq1 Length=8341428 Score = 102 bits (112), Expect = 8e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| | || || |||||| ||||| || || | Sbjct 3817649 GATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCG 3817708 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| || |||||||| || || ||||| || || ||| | || | ||||| Sbjct 3817709 AAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC-TGAATCTTGGCTTTAAC 3817767 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||||| ||||||||||| | || | ||| || || || || |||| Sbjct 3817768 GTTGT-CAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTT 3817826 Query 138599 TTACAAAAATCTGCATG 138615 ||||||| ||||||||| Sbjct 3817827 TTACAAAGATCTGCATG 3817843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | ||| | || | | | ||||||||||||||||||||||| Sbjct 3816717 CCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCA 3816776 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| || || || |||| |||| | | ||| ||||| || || Sbjct 3816777 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 3816836 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| |||||| |||| ||| || | ||| |||| ||| | Sbjct 3816837 ATGCCTTCCTTATC-TTGAATTTTTGCCTTAACGTTG-TCAATGGTATCGGAGCTCTCGA 3816894 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||||| ||| || || || |||||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || ||||||||||||||| | ||| || ||||| ||||| || |||| Sbjct 3817875 TTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGG 3817934 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | || || || ||||| || || ||||| || || |||||| || | Sbjct 3817935 CGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGA 3817994 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||||||||||| | || | || || || || || || | Sbjct 3817995 CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCT 3818054 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 3818055 TAACGAAGATTTGCAT 3818070 >seq16 Length=5655878 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | ||| || ||||||||| || || |||| Sbjct 2199355 GATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCG 2199296 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||| |||||||| || || ||||| ||||| ||| ||| || | | Sbjct 2199295 AAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACA 2199236 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||| || |||| || | || ||||| || || ||||| Sbjct 2199235 TTG-TCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTT 2199177 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 2199176 CACGAAGATCTGCATGG 2199160 >seq32 Length=4239389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| || ||||| ||| | || || |||||| ||||| ||||| | | Sbjct 977321 GATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCA 977380 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||||||||| || || || || ||||| || ||| | |||| |||| Sbjct 977381 AAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATCTTTGCCTTAAC 977439 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | || || | |||||||||| || | ||||| ||||| ||||||| Sbjct 977440 ATTGT-CAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTT 977498 Query 138599 TTACAAAAATCTGCAT 138614 |||| || || ||||| Sbjct 977499 TTACGAATATTTGCAT 977514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || ||||| || | |||||||| | |||| |||||||||||||| || || ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | || || || || ||||| | | | || | | |||||||||||| | Sbjct 976892 -AGAGTCCTGCCA-TCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTG 976949 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||| || || || ||| || ||| | | || | || || | ||||| Sbjct 976950 GAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCA 977009 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 977010 CTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 >seq78 Length=1515738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | || ||||||||||| |||||||| | Sbjct 1185337 CCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCC 1185396 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || ||||||||||| | | ||||| | ||||||||| || || Sbjct 1185397 AAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGA 1185456 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| ||||| || ||| || || | | || | ||| || | |||||| Sbjct 1185457 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACC 1185516 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| || ||||| || || || ||||| Sbjct 1185517 TCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496067219998080