Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq78 125 5e-24 seq32 118 8e-22 seq1 96.9 2e-15 seq16 93.3 3e-14 >seq78 Length=1515738 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||| || |||||||| || |||||||||||||||||||| | Sbjct 1185565 CCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCG 1185624 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||| || |||||| | || | | || ||||| || Sbjct 1185625 AGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGG 1185684 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||||||| |||||| | || ||||| || | |||| || Sbjct 1185685 ATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACC 1185744 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || |||||||| ||||| |||||||| Sbjct 1185745 TCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || || || || ||||| ||||| || ||| ||| | || | ||| Sbjct 1184897 AACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTACCATCT 1184956 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || |||||| | ||||| | ||||||||| ||| || ||||| || || Sbjct 1184957 TCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCT 1185016 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || || ||| | || || ||||| | | || || || || || || ||| Sbjct 1185017 TGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGTGATTGTT 1185076 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || | |||||| |||||||||||||| Sbjct 1185077 TTCCC-GTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| |||||||||||| || | | | ||||| | || Sbjct 1185133 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGC 1185192 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | ||||| | ||| ||||| |||| ||| |||||||| ||| || Sbjct 1185193 TTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTA 1185252 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || |||| || ||||| ||||| ||||| || || Sbjct 1185253 GCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTTTTCCCCGTA 1185312 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||||||||| Sbjct 1185313 AGTGTTTTGACGAAAATTTGCAT 1185335 >seq32 Length=4239389 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| ||||||| | |||||||| | || || || ||||| ||||| ||||| ||| Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | || | ||||| | || || ||||| | ||||| | ||||||||| ||| Sbjct 976892 -AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || ||||| || || || ||| ||| | || || ||||| | || || Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| ||||| || |||| ||||| ||||||||||||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCATA 977059 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || ||||| || ||||| || ||||| || ||||||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| |||| || | ||| || ||||| | || | | |||||||||| |||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || || || || ||| ||||| || ||| | || || ||||| |||| || Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTA-ACATTGTCAATTGTATCAGAGCTTTCCAC 977466 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 977467 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || || || || ||||| || |||| | | | |||| || Sbjct 977077 AACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTC 977136 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | || | | ||||||||| |||||| ||||||||||| Sbjct 977137 GAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTG 977196 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || ||||| | | || || || | || |||||||| Sbjct 977197 TATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTT 977256 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 977257 GCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 >seq1 Length=8341428 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| || || ||||| ||||||||| || ||| |||| || | ||| Sbjct 3817640 TGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGC 3817699 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | ||| || ||||| |||||||||||||| || ||| ||| Sbjct 3817700 TTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTG 3817759 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || ||||| ||| | || || || | ||| || || || || || Sbjct 3817760 GCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTA 3817819 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || ||||| Sbjct 3817820 AGTGTTTTTACAAAGATCTGCAT 3817842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| ||||| || || || || ||||||||||| ||| ||| | ||| Sbjct 3816960 AACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCT 3817019 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC-GTTTGGAATTCCTTCCTTGTC 15083 || || ||||| |||||| | || | | ||| ||||| | ||||| ||||||||||| Sbjct 3817020 TCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCTTGTC 3817079 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| || || || | || || || || | || || || ||||| ||||| Sbjct 3817080 CTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGATGGT 3817139 Query 15144 TTTACCTGTCAGAGTTTTT-AC-AAAAATTTGCATA 15177 || || || ||||||||| || ||||||||||||| Sbjct 3817140 CTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCATA 3817175 >seq16 Length=5655878 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| ||| |||| || | || Sbjct 2199364 TGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGC 2199305 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | ||||||||||| ||||| || |||||||||||||| || ||| Sbjct 2199304 TTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTT 2199245 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || |||||| | || || || | || ||||| ||||| || Sbjct 2199244 GC-CTTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGT 2199186 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || ||||| || || || ||||| |||| Sbjct 2199185 TAGGGTTTTCACGAAGATCTGCATGGTTGA 2199156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357254951783240