Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 seq78 104 2e-17 seq1 98.7 9e-16 seq12137 91.5 1e-13 >seq32 Length=4239389 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || ||||||||||| ||| || ||| ||| || | || |||||| Sbjct 976634 GTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGCTTTCCA 976693 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || ||| ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 976694 GCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTC 976753 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| |||||||| | || | || || || || | || Sbjct 976754 ACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAACGTC 976813 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 976814 TTCACGAAAATCTGCAT 976830 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | ||||| || ||||| |||||||||||| | Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || || || || ||||| |||| | | ||| || ||||| || Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || | | ||| | | || ||| | | || | || || | || || || Sbjct 977408 ATGCCCTCTTTAT-CTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCAC 977466 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | |||||||| || ||||||||||| || || ||||| Sbjct 977467 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||| || || ||||||||||| || | | || || || || Sbjct 977078 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCG 977137 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| | || | || ||| || || || || || || |||||||| Sbjct 977138 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGT 977197 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | || | ||| || | |||||| || || | || | |||||| Sbjct 977198 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTG 977257 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||| Sbjct 977258 CCAGTAAGGGTCTTCACAAATATTTGCAT 977286 >seq78 Length=1515738 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||||||| ||| || || ||| || | ||||||||| Sbjct 1184684 GTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCA 1184743 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || ||||| || ||||| || |||||||||||| |||||| ||| Sbjct 1184744 GCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTA 1184803 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| || || | || | || || || |||| || Sbjct 1184804 ACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTC 1184863 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 1184864 TTCACAAATATTTGCAT 1184880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||||||| | || || || |||||||||||||| || | Sbjct 1185336 TCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGC 1185395 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || || ||||| |||||| | || | | ||| || || || || Sbjct 1185396 CAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGG 1185455 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || || ||| || ||| | | |||| ||| || | || || || Sbjct 1185456 AATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCAC 1185515 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||| || || || ||||| Sbjct 1185516 CTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| | || | || || || |||||||| ||||||||| | Sbjct 1185108 TCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGC 1185167 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || ||||| || || || ||||||| | |||||| || || || Sbjct 1185168 TAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGG 1185227 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | |||||||||| | ||| | | || |||| | |||| ||||| | || || | Sbjct 1185228 AACTCCCTCCTTGT-CTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAA 1185286 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||| || || || ||||| || ||||| ||||| Sbjct 1185287 CCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 >seq1 Length=8341428 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || |||||||||||| | | || || || || || || |||||| Sbjct 3817646 GTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 3817705 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| || || || || || ||||| ||| ||| | | |||| Sbjct 3817706 GCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCC-TGAATCTTGGCTTT 3817764 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| || | ||||| | | ||| || || | ||| | ||| || ||||| || | Sbjct 3817765 AACGTTG-TCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTG 3817823 Query 127095 TTTTTACAAAAATCTGCATG 127114 |||||||||| ||||||||| Sbjct 3817824 TTTTTACAAAGATCTGCATG 3817843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| || ||||| | | || | ||| || |||||||| || Sbjct 3816519 GTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCG 3816578 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || ||||||| | |||||| || || || || |||||||||||| ||| ||| ||||| Sbjct 3816579 GCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTT 3816637 Query 127036 -GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 |||| |||| || || | |||||| || || | || | || || || |||| | Sbjct 3816638 CACGTTG-TCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGG 3816696 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || || |||||||| Sbjct 3816697 TCTTAACGAAGATCTGCAT 3816715 >seq12137 Length=235 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| ||||||||| ||||||| | |||||| || || || || |||||||| Sbjct 235 ATCTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTT 176 Query 127018 -GTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 |||| ||| || ||| | ||||| | | |||||| | ||| || || | ||| Sbjct 175 TGTCCTGGATCTTGGCCTTCACGTTGT-CAATGGTGTCAGACGACTCAACCTCAAGGGTG 117 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || |||||||| || || || |||||||||||| Sbjct 116 ATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCATG 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475313785535360