Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq78 132 4e-26 seq32 102 7e-17 seq16 89.7 5e-13 >seq1 Length=8341428 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| | ||| || || || || |||||||| || ||||| |||||| Sbjct 3817613 ATGCCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCG 3817672 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | ||| ||||| ||| | || | |||||||||||||| Sbjct 3817673 GCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGG 3817732 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| |||| | || | || | || | || | |||||||||||||| Sbjct 3817733 GGAATTCCTTCCTTATCCTGAA-TCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTC 3817791 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || ||||| || ||||||||||| || ||||| Sbjct 3817792 CACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| ||||| || ||||| | ||| ||| ||| Sbjct 3817406 ACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCC 3817465 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || ||||| ||| | || | || ||||||||| || ||||| ||||| ||||| || Sbjct 3817466 AACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 3817525 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||| ||||| ||||| || ||||| || | || || Sbjct 3817526 ATCTTGGCCTTGA-CGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTT 3817584 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || |||||||||||||| Sbjct 3817585 TCCGGTAAGAGTCTTGACAAAAATTTGCAT 3817614 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | || || || || ||||| || || || || || || ||| Sbjct 3817841 ATGCCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCG 3817900 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || ||| | |||||||||||||| ||||| Sbjct 3817901 GCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGG 3817960 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| || ||||| |||| || | || | ||||||||||||||| Sbjct 3817961 GGAATCCCTTCCTTATCCTGGATTTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTC 3818019 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || || || || || || ||||||||| Sbjct 3818020 CACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCATC 3818071 Score = 107 bits (118), Expect = 2e-18 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| ||||| || || || ||||| ||||| || ||||| Sbjct 3816942 ATACCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCT 3817001 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| ||||| || ||| | || | || |||||||| || Sbjct 3817002 GCAAGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGG 3817061 Query 45231 GG-AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || ||||||||| || || ||||| || || | || | || | ||||| ||||||| Sbjct 3817062 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCA-CGTTGTCAATTGTGTCAGAAGACT 3817120 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT-AC-AAAAATTTGCAT 45340 | || || | || | || || ||||| ||||||||| || |||||||||||| Sbjct 3817121 CAACCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || || || || || || |||||||| || || || || Sbjct 3816714 ATTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 3816773 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||| || ||||| ||| | ||||| | |||||||| || Sbjct 3816774 GCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGG 3816833 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| |||||||||| |||||| | | || | || | ||| ||||| ||| Sbjct 3816834 GGAATGCCTTCCTTATCTTGAA-TTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTC 3816892 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| || || || || | ||| || || || || ||||| Sbjct 3816893 GACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 >seq78 Length=1515738 Score = 132 bits (146), Expect = 4e-26 Identities = 168/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | |||||| | || || |||||||||||||| || ||||| ||| Sbjct 1184879 ATTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1184938 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| |||||||| || || ||| | ||||||| || ||||| || Sbjct 1184939 GCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGT 1184998 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||||||||| || || | || | || || ||| ||| Sbjct 1184999 GGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCA 1185058 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || |||| |||||| |||||||||||||| Sbjct 1185059 ACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| ||||| || || ||||| || |||| | ||| || | ||| Sbjct 1185589 TGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCAAGTTGC 1185648 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | | ||||||||| || || || ||||| |||||||||||||| Sbjct 1185649 TTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTG 1185708 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||| ||| || || || || || | ||||| ||||| Sbjct 1185709 GCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTTTCCGGTG 1185768 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| ||||||||| Sbjct 1185769 AGAGTTTTCACAAAGATTTGCATC 1185792 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| || || || || ||||||||||| || || |||||| Sbjct 1185106 ATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCG 1185165 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || ||||| | ||||| | ||||||||||| Sbjct 1185166 GCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGG 1185225 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||| || || || |||||||| || ||||| || | ||||| || || Sbjct 1185226 GGAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCA 1185285 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 1185286 ACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCAT 1185335 >seq32 Length=4239389 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || || | ||| | ||| || || ||||||||||||||||| |||||| Sbjct 977285 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCG 977344 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| || || || | || | | || ||||| || Sbjct 977345 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 977404 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| |||||||||||||| ||| || | || | || || || || Sbjct 977405 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCC 977464 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | |||||||| || ||||||||||| || ||||||||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATC 977515 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 ||||| ||||| | | | ||||| ||||| ||||||||||||||| || |||||||| Sbjct 976829 ATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCT 976888 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || | ||| || | || || || || | ||||| | || |||||||| Sbjct 976889 GCT-AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGG 976947 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||| || || ||| | || | || || || ||| Sbjct 976948 TGGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTC 977007 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || | ||||| |||||||||||||| Sbjct 977008 CACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 >seq16 Length=5655878 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | ||| || || || || |||||||| || || || || ||| Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | ||||| || ||||||||||| || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || ||| |||| || | ||| ||||| ||| ||| Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACT 2199209 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || ||||| ||||| || || || ||||| Sbjct 2199208 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451825427141440