Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 104 3e-17 seq29 100 3e-16 >seq23 Length=5684809 Score = 104 bits (114), Expect = 3e-17 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || ||||| || || || || || | ||| || ||||| || || Sbjct 1473442 AGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCC 1473383 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | || || || |||||||||||||| | || || || |||||||| || Sbjct 1473382 AGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAAT 1473323 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| || || || || || || | ||||| ||||| || | | | |||||| Sbjct 1473322 TCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGA---GTCCGTGCTATCAAT 1473266 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||||| |||||| | ||||| |||| | ||||||||| || | || || | ||| Sbjct 1473265 CCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAA 1473206 Query 127759 GAG 127761 || Sbjct 1473205 CAG 1473203 >seq29 Length=4237707 Score = 100 bits (110), Expect = 3e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| |||||||| || |||||||| ||||| || | ||||||||| | Sbjct 3793717 AACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACCT 3793658 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | || | || || || ||||| || ||||||||||| || || Sbjct 3793657 CCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCAA 3793598 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || | ||| || ||| ||||| | || || |||||| ||||| ||||| || Sbjct 3793597 GG-AGCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAAC 3793539 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| || ||||| | | ||| | ||| || ||| || ||| | |||||| || Sbjct 3793538 AAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAGC 3793479 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | ||| ||||| || || || || || || || ||| Sbjct 3793478 CACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGGT 3793442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613265907618240