Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq16 125 8e-24 seq1 107 2e-18 seq78 96.9 4e-15 >seq16 Length=5655878 Score = 125 bits (138), Expect = 8e-24 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||||||||| | ||| | ||| || || | || ||||| || || |||||||||| Sbjct 2199389 GCCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGC 2199330 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||| || |||| ||||||||||| |||||||| ||||| ||||||||||| | || Sbjct 2199329 TAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGG 2199270 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTC 46542 | | ||||||||| |||||| ||||| | | | || || |||| || Sbjct 2199269 GATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TC 2199213 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 2199212 AACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq1 Length=8341428 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||||| ||||| || | || || || |||||||||||||| Sbjct 3817879 CTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 3817938 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | || | | ||||| ||| ||| || ||||| ||| Sbjct 3817939 GATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGA-CGT 3817997 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | |||||||| ||||| || || || |||| Sbjct 3817998 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAA 3818057 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 3818058 CGAAGATTTGCAT 3818070 >seq78 Length=1515738 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| |||| ||| || || | || |||||||||||||| || || Sbjct 1185145 TCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAG 1185204 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || || | ||||||||| ||||| |||| | Sbjct 1185205 ATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTA 1185264 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| ||| || || | || || ||||| ||||| || ||||| Sbjct 1185265 TCGATTGTGTCAGAGCT---TTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTG 1185321 Query 46580 ACAAAGATTTGCATT 46594 || || ||||||||| Sbjct 1185322 ACGAAAATTTGCATT 1185336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565016091737280