Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq32 134 1e-26 seq16 127 2e-24 seq78 125 7e-24 seq1 98.7 1e-15 seq11182 91.5 1e-13 >seq32 Length=4239389 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||||||||| ||||| |||||||| |||||| |||| || || | | Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | ||| || | || |||||||| ||||| |||||||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || |||| || || || ||| ||||| Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 977335 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || ||||||||||| Sbjct 977334 ATCCAAAAGGAATCTACACTCCATTTGGTGCT 977303 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || |||||||||||||| | || || ||| | Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||||| | ||||| || || ||||| | |||||| Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACCAA 977167 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || |||| || || || ||||| || |||| ||| || ||| |||||||| Sbjct 977166 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTACAAT 977107 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | || ||||||||||| || ||| Sbjct 977106 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGT 977071 >seq16 Length=5655878 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || |||||||| |||| || ||| | || Sbjct 2199162 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAGAGCTCC 2199221 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || ||||| ||| | ||||| Sbjct 2199222 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAG 2199281 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||||| || |||| || || || |||||||||| Sbjct 2199282 CAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGACTACAAC 2199341 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||| |||| || || | ||||| ||| | ||||| ||| Sbjct 2199342 ATTCAGAAGGAATCGACCCTCCACCTTGTGCTTCGTCTCAGAGGAGGC 2199389 >seq78 Length=1515738 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || || | | Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| || |||||||| |||||| | ||||| Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| |||| ||| || ||||| || || || | || || | |||||||| Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || ||||||||||||| ||| Sbjct 1185384 TATTCAAAAGGAATCCACTTTGCATTTGGTGCTTCGT 1185348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || || || | || || || || ||||| | || || ||| | | Sbjct 1184881 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACAATCACATTGGAGGTTGAGAGCTC 1184822 Query 38303 CGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| |||| | ||||||| ||||| ||||| || || | |||| Sbjct 1184821 AGACACCATTGATAACG-TTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 1184763 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | ||||||| ||| || ||||| |||| || | || || | ||| |||| Sbjct 1184762 AGCAAAGACTCATTTTCGCTGGAAAACAATTGGAGGATGGACGTACATTGGCCGATTACA 1184703 Query 38422 ACATCCAAAAGGA 38434 |||| |||||||| Sbjct 1184702 ACATTCAAAAGGA 1184690 >seq1 Length=8341428 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || | || || || || || ||| |||| |||||| | || Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTCC 3816884 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| |||| | |||||| | || || || || |||||| | ||||| Sbjct 3816883 GATACCATTGACAACG-TTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || |||||||| || | | || || |||||||| Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || || | || || ||| |||| || || Sbjct 3816764 CATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGAGGGGAGG 3816717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTC-GT-AAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 |||||||| || || |||||| ||||| || || ||||||||| | || || ||| | Sbjct 3817174 ATGCAAATTTTTTGTCAAAAACTCTCACCGGGAAGACCATCACCTTGGAGGTTGAGTCTT 3817115 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||| | | |||| | || | || || | ||||| || || |||||| || || Sbjct 3817114 CTGACACAATTGACAACG-TGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCCAGA 3817056 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | || || | ||| || |||||| |||| || | || || || || || Sbjct 3817055 CCAGCAGAGACTTATCTTCGCTGGGAAACAGTTGGAAGATGGCCGAACTCTTGCAGATTA 3816996 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| |||| || ||| | ||| ||||| Sbjct 3816995 CAACATCCAGAAGGAGTCGACCCTCCATCTTGTGTTGCGT 3816956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||||||| | || || ||| | || Sbjct 3818070 ATGCAAATCTTCGTTAAGACCCTTACAGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 3818011 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| || || || || |||||| | || || Sbjct 3818010 GACACCATCGACAACG-TCAAGGCCAAAATCCAGGATAAGGAAGGGATTCCCCCGGATCA 3817952 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| ||||| || || || || | || || || ||||||||| Sbjct 3817951 GCAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAA 3817892 Query 38423 CATCCAAAAGGA 38434 ||| || || || Sbjct 3817891 CATTCAGAAAGA 3817880 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || || |||||| |||| || ||| || || Sbjct 3817614 ATGCAAATTTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 3817555 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 3817554 GATACCATTGATAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 3817496 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | ||| || || ||| |||| || | || || || || ||||| Sbjct 3817495 GCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAGGATGGACGAACTCTTGCTGATTACAA 3817436 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | || || ||| | || || || Sbjct 3817435 CATCCAGAAGGAATCTACTCTTCATCTTGTCCTCCG 3817400 >seq11182 Length=218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| |||||||||||| |||| ||||| || | Sbjct 69 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 128 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||| |||||||||||| | ||||| Sbjct 129 GATACCATCGATAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 187 Query 38363 ACAGCGGCTCAT 38374 ||| | ||||| Sbjct 188 ACAAAGACTCAT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499976082037760