Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq23 154 2e-32 seq29 125 9e-24 seq34 118 1e-21 seq2 82.4 9e-11 >seq23 Length=5684809 Score = 154 bits (170), Expect = 2e-32 Identities = 596/916 (65%), Gaps = 33/916 (4%) Strand=Plus/Plus Query 101719 ACGAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCC 101776 |||| |||||||| ||||| | | | | || ||| ||||||| | | ||||| Sbjct 1472832 ACGAGCCTCTCCTCGCCCCTAACCCCGATCGCTT--CTGCATGTTCCCAATTCAATATCC 1472889 Query 101777 ACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTA 101834 || ||||||| | || ||||| || | | | | || |||| || |||||||| Sbjct 1472890 TCAAATCTGGGAGATGTACAAGAAAGCCCTA--GCCTCCTTCTGGACCGCCGAAGAGGTC 1472947 Query 101835 GATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATA 101894 ||||||||| | || | | ||||| | | ||| | | || || | ||||| Sbjct 1472948 GATCTCTCACAAGACCTCCGCCATTGGGATTCCTTAACTTCCGACGAGAAACACTTCATC 1473007 Query 101895 AAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAAC 101954 | ||| |||| || ||||| || | || ||||| || ||||| ||||| | | | Sbjct 1473008 ACTTACGTCCTTGCCTTCTTCGCCGCCTCTGATGGTATCGTTTTGGAGAACCT---TGCC 1473064 Query 101955 A-ACTTTGC-TGAT-GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGT 102011 || | | ||| || || ||| | ||||||| ||| | ||||||| | |||| | Sbjct 1473065 GGACGGTTCATGAAAGAAGTCCAAGTCGCTGAAGCCAGAGCCTTCTATGGATTTCAAATT 1473124 Query 102012 CATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGAT 102071 || ||| | | ||| |||| || ||| ||| | || | ||||| |||||| Sbjct 1473125 TGTATTGAGAACATTCATTCTGAGATGTATAGTCTTCTCCTTGAAACTTATATCAAGGAT 1473184 Query 102072 GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAA 102131 ||||||||| | ||| ||| | || || | || || |||||| | | ||||| Sbjct 1473185 TCCAGTGAGAAGAATCGGCTGTTTCATGCTATTGATACTGTCCCATGTGTGAAGAAGAAG 1473244 Query 102132 GCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 102191 || |||||||| |||||||| |||||| | || || ||||||||||| | || Sbjct 1473245 GCCGATTGGGCGTTGAAGTGGATTGATAGCA---CGGACTCATTTGCTGAGCGGATTTTG 1473301 Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 |||||||| || || ||||| || |||||||| ||| |||||| |||||| ||| | Sbjct 1473302 GCATTTGCTTGCGTCGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTG 1473361 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 || || || || | ||||| || | ||||| ||||| | || || || || || Sbjct 1473362 AAAAAACGTGGGTTAATGCCTGGATTGACGTTCTCAAACGAATTGATTTCACGAGATGAA 1473421 Query 102312 GGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGA 102369 || || || || ||||| | | | | ||| ||| ||| | | || | || Sbjct 1473422 GGTCTTCATTGTGATTTTGCTTGTTTGTTGTATTC--ATTGTTGAGGAAGAA---ATTGA 1473476 Query 102370 CTGAG--ACTATTCATTC-TATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATAT 102426 |||| | | | | | ||||||| ||| ||||| || || |||| || |||| | | Sbjct 1473477 GTGAGGATCGAGTGAGGCAGATTGTTACGGAGGCCGTGGATATAGAGAGGGAATTCGTTT 1473536 Query 102427 TGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTG 102486 ||||| | || ||||| | || |||||| || |||| |||| |||| Sbjct 1473537 GTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGAGATTTGATGAGTCAATACATTG 1473596 Query 102487 AGTATGTATCTGATAGATT-GTTGAAGCAGATCGGGGTGC-CTCCAATTTGGAA-CTCCA 102543 | | ||| | ||||| || |||| | | || ||||| | ||| | || | || Sbjct 1473597 AATTTGTGGCGGATAGGTTGGTTG--GAACATTGGGGTACGAGAAAATCTATAATGTTCA 1473654 Query 102544 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 102603 | || |||||||| | |||||| ||| | | |||||||| || ||||| || | Sbjct 1473655 A-AACCCATTTGATTGGATGGAGTTGATTTCGTTGCAAGGGAAGACTAATTTCTTTGAGA 1473713 Query 102604 AGAGGGTTGGGGACTA 102619 | || |||||||| || Sbjct 1473714 AAAGAGTTGGGGAATA 1473729 >seq29 Length=4237707 Score = 125 bits (138), Expect = 9e-24 Identities = 273/406 (67%), Gaps = 2/406 (0%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| ||||| || || ||||| || | ||||||||| | Sbjct 3793718 AAACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACC 3793659 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||| || | | || | ||||| |||||||||||||||||||| || ||||| Sbjct 3793658 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCA 3793599 Query 16094 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || | ||| | | | ||||| | ||||| || | | || |||||||||| Sbjct 3793598 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAA 3793540 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | || ||| | ||| || ||| || || || |||||| | Sbjct 3793539 CAAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAG 3793480 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 | | ||| ||||| |||||||| || || ||||| || || | || || ||| Sbjct 3793479 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGGTGGTCCAACAAGAAGACACCCTT 3793420 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 ||| || || || ||| | ||| | ||||| | ||| | ||||| |||| | Sbjct 3793419 TTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGATTCTTCAAGAAATCAACAACTT 3793360 Query 16333 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 ||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 3793359 CTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 3793314 >seq34 Length=3787072 Score = 118 bits (130), Expect = 1e-21 Identities = 288/427 (67%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || || || || || |||| ||| || |||||| | | | Sbjct 2304954 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 2304897 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || |||| ||||||||||| |||||||| ||||| |||||| | Sbjct 2304896 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 2304842 Query 16036 TACCACCA---GCACTG---CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||||| || || | ||| ||| || |||||||| ||||||| || || | Sbjct 2304841 -ACCACCAATTCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 2304783 Query 16090 TGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 |||| ||| |||||| | | | |||| |||||||| || || || || || | Sbjct 2304782 TGCAAGGTGCATTTTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAAT 2304725 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 |||||||||||| || ||||| | | | | | || | || || |||||| | || Sbjct 2304724 ACCAACAAACATTTCAACAAACTCAGAACCCG-ATATAGAGAAAAATGGGACACCTGCTT 2304666 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| |||||||| ||| || | ||| || || || || || ||| | ||||| Sbjct 2304665 CACCAGCAATGGCCTTGGCTAGCAAAGTTTTCCCAGTTCCAGGAGGACCAACAAGGAGAA 2304606 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||||| ||||| || ||| || | | ||||| || | |||||| || |||| Sbjct 2304605 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGGAACTCCA 2304546 Query 16327 CAATCTC 16333 | | ||| Sbjct 2304545 CCACCTC 2304539 >seq2 Length=2963668 Score = 82.4 bits (90), Expect = 9e-11 Identities = 307/466 (66%), Gaps = 19/466 (4%) Strand=Plus/Plus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| |||||||| ||||| || | | || || | || | |||||| | ||| Sbjct 666977 ATCTGCCGATCAAACCGACCAGGTCTCAACAGAGCTTTGTCCAAAATATCAGGCCTGTTC 667036 Query 15939 GTTGCGGCGATGACAACAATACCTGTT-TCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || | || | ||||||| || | | ||| |||| |||||||||||| || | Sbjct 667037 GTACCAGCAAGTACAACAACCCCAGAAGTAGTTC-CAAACCCATCCATCTCTACCAGCAA 667095 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTG--CGT 16052 ||| |||| ||| || || ||||||||| || |||| || | | | | | Sbjct 667096 CTGATTAAGAGTACTCTCACGCTCATCATTCCCT---CCACCAAAGCCTCCCCGGCCCCT 667152 Query 16053 TGCT-TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC 16111 |||| ||| | ||||| ||||||||||| || ||||| | ||| | || ||||| Sbjct 667153 TGCTCGTCCAATCGCATCTATCTCATCAATAAATACGATACTTGGAGCACGTTGTCGAGC 667212 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAG 16169 ||| ||| || | | || || |||| | || || || |||||||| |||| ||| Sbjct 667213 TTCTTGAAATAGGTTTC-TA-ACCCTTGATGGCCCAACCCCCACAAACATTTCCATAAAA 667270 Query 16170 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 16228 | | | | | || | | ||| || |||| ||||||||| ||| | ||| || || Sbjct 667271 TCCGATCCAG-AGATGGACAGGAAAGGCACATCAGATTCACCTGCAGTTGCTTTTGCTAG 667329 Query 16229 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||| || || || ||||| || || | || || |||||| ||||| || || || Sbjct 667330 AAGTGTTTTCCCAGTACCAGGGGGGCCAACAAGTAGAGCACCTTTGGGAATTTTTGCTCC 667389 Query 16289 -ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | ||| | ||| ||| || | ||||||||| | ||||| ||| Sbjct 667390 TAACTCCTCA-TATTTCTTTGGATTCTTAAGAAAGTGCACAAACTC 667434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620498262014080