Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq29 86.0 7e-12 seq7 84.2 3e-11 seq23 82.4 9e-11 >seq29 Length=4237707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 195/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || || |||||||| || | ||||| |||||||| || || | |||||| || Sbjct 3793717 AACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACCT 3793658 Query 11653 ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 | ||||||| | || | || ||||| ||||||||||| ||||| || || || Sbjct 3793657 CCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCAA 3793598 Query 11713 GGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 || | || | || || || | || || | || || || | | || || ||||| || Sbjct 3793597 GG-AGCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAAC 3793539 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 |||| || || || | || ||||| ||| | ||| || || || |||||||| Sbjct 3793538 AAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAGC 3793479 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 | ||| || || || ||||| || || ||||| |||| ||| | ||||| Sbjct 3793478 CACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGGTGGTCCAACAAGAAG 3793428 >seq7 Length=7328097 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 |||||| || || || ||||||| |||| |||||||| | ||| |||| ||| || Sbjct 6776025 AACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCATTAGATGTTCC 6776084 Query 110835 ATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATAC 110893 |||||| || | ||| | || || ||||||||| | |||||| | |||||||| Sbjct 6776085 ATTTGTTCCACGAATATAACTACCCAT-GGCACGAATATTGTGGATGGAAACACCAATAC 6776143 Query 110894 CACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAAT 110951 |||| || |||| ||||| ||||||||| | | ||| |||| || || || || Sbjct 6776144 CACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATATTCCTTCTAT 6776201 >seq23 Length=5684809 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || |||||| |||||||| || || || | || || ||| | |||| Sbjct 1473441 GCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCA 1473382 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||| || | ||| || || | || ||||| || || ||||| || Sbjct 1473381 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATT 1473322 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCA 119674 ||||| || || || || || || | ||||||||||| | ||| | | || | ||| Sbjct 1473321 CCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGAGTC-CGTGCTATCAATCCA 1473263 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| | ||||| | |||||| || | || |||||||| | || || | || || Sbjct 1473262 CTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAG 1473203 Query 119735 TTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 | ||||| ||| |||||| ||||| | |||| ||| Sbjct 1473202 CCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAG 1473161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588744355739200