Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq29 125 8e-24 seq34 111 2e-19 seq59 86.0 7e-12 >seq29 Length=4237707 Score = 125 bits (138), Expect = 8e-24 Identities = 275/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| || || || || ||||| || | ||||||||| | Sbjct 3793718 AAACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACC 3793659 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | || | ||||| |||||||||||||||||||| ||||| || Sbjct 3793658 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATGCA 3793599 Query 9401 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | ||||| | || || || || || |||||||||| Sbjct 3793598 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCACACCAA 3793540 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | || ||| | ||| || ||| || || || |||||| | Sbjct 3793539 CAAACAATTCTACAAACTCTGAGGCAGCACAGGAGAAGAATGGCACGCCAGCTTCACCAG 3793480 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578 | | ||| ||||| |||||||| || || ||||| || | || | || | ||||| Sbjct 3793479 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGG-TGGTCCAACAAGAAGACACCCT 3793421 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||| || || || ||| | ||| | ||||| | ||| | ||||| |||| Sbjct 3793420 TTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGATTCTTCAAGAAATCAACAACT 3793361 Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 3793360 TCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 3793314 >seq34 Length=3787072 Score = 111 bits (122), Expect = 2e-19 Identities = 283/425 (67%), Gaps = 18/425 (4%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||| || |||||| | | | Sbjct 2304954 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 2304897 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || |||| ||| ||||||| |||||||| ||||| |||||| | Sbjct 2304896 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 2304842 Query 9343 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 ||||||| || ||| | || ||| || |||||||| ||||||| || |||| Sbjct 2304841 -ACCACCAATTCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 2304783 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | || ||| |||||| ||| | | |||||||| ||||| | || || | || Sbjct 2304782 TGCAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAATAC 2304723 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9515 |||||||||| || ||||| | | | | | || | || || |||||| | |||| Sbjct 2304722 CAACAAACATTTCAACAAACTCAGAACCCG-ATATAGAGAAAAATGGGACACCTGCTTCA 2304664 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||||||| ||| || | ||| || || || || || ||| | ||||| || Sbjct 2304663 CCAGCAATGGCCTTGGCTAGCAAAGTTTTCCCAGTTCCAGGAGGACCAACAAGGAGAACA 2304604 Query 9576 CCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || ||||| || ||| || | | ||||| || | ||| || || ||||| Sbjct 2304603 CCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGGAACTCCACC 2304544 Query 9636 ATCTC 9640 | ||| Sbjct 2304543 ACCTC 2304539 >seq59 Length=2086427 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 136154 TCAACTAAAAGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCT 136213 ||||||| | ||| || |||||||||| | |||||||||||||||||||||||||| Sbjct 651433 TCAACTAGTGGTTCT-ATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTG 651375 Query 136214 GGTTCAAATCCAGGTAGGAGCTTT 136237 ||||| | ||| ||||||| |||| Sbjct 651374 GGTTCGACTCCCGGTAGGACCTTT 651351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589748760551360