Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq39 91.5 1e-13 seq16 86.0 4e-12 >seq1 Length=8341428 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || | |||| | | | |||| || |||||||| |||||||| Sbjct 3816525 TCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCAAGCTGTTTCCCGGCAAAG 3816584 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | ||||||||||| ||| || ||| ||| Sbjct 3816585 ATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTCACGTTG 3816644 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || | || ||||| ||||| || | ||||| || Sbjct 3816645 TCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACG 3816704 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3816705 AAGATCTGCAT 3816715 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| | | ||| | ||||| ||| || || |||||||| ||||| | Sbjct 3816715 TTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG 3816774 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| |||||||| |||||||| || || | | ||||||||| | | Sbjct 3816775 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 3816834 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||| || || ||| | || | || | ||| | Sbjct 3816835 GAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGA 3816894 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | |||| ||| || || || || || | |||||| || || ||||||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCATA 3816944 >seq39 Length=3648736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| | |||||||| | ||||||||||||||||| || || || |||||||| Sbjct 1061493 AATCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 1061552 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 ||| || | ||| |||| |||| |||| || || || ||||| |||| || ||||| Sbjct 1061553 ATAATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTG 1061612 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | || |||||||| Sbjct 1061613 GTCAGGAGGAATACCTTCCTTGTC 1061636 >seq16 Length=5655878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| | || |||| | || || ||||| |||||||| || Sbjct 2199353 TTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 2199294 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | || |||||||| ||||| ||||| | Sbjct 2199293 AATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGAC--A 2199236 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | |||||| |||| || ||||| || ||||| || || | Sbjct 2199235 T--TGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTT 2199178 Query 34966 TCACAAAGATCTGCAT 34981 |||| ||||||||||| Sbjct 2199177 TCACGAAGATCTGCAT 2199162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324509113564992