Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq23 214 2e-50 seq7 114 1e-20 >seq23 Length=5684809 Score = 214 bits (236), Expect = 2e-50 Identities = 577/874 (66%), Gaps = 13/874 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| ||||| |||||||||| |||||||||||||| || || | || || || | Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||||||||| |||| |||||||| ||||| | | | || ||| | | Sbjct 1473675 TCCATCCAATCAAATGGGTTTTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAACC 1473616 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||||| ||||||| ||| ||| |||||| ||| | ||||||||| | | Sbjct 1473615 AACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGA 1473556 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || || | ||||| || ||||| ||||||| || ||||| | | ||| Sbjct 1473555 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATC 1473496 Query 18910 GATACAACTCTATCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 |||| ||| ||| | | | || | | | ||| |||||| ||||| Sbjct 1473495 TGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACA-ATGAATACAACAAACAAGCAAA 1473437 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| || || || |||| |||||||| || || || || || |||||||| Sbjct 1473436 ATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCAT 1473377 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTT 19087 | || | |||||| |||||||| |||| |||| || || || ||||| || || | Sbjct 1473376 TAACCCACGTTTTTTCAACCAGAAAATAG-AGCAGAAACTACCTGAGAAGAAAATTCCCT 1473318 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| || | | | || || || || || | ||| |||||| | Sbjct 1473317 CGACGCAAGCAAATGCCAAAATCCGCTCAGCA-AATGAG--TCCGTGCTATCAATCCACT 1473261 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA--- 19204 ||| |||||||| |||||||| || |||||||| | || || |||| || ||| | Sbjct 1473260 TCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCC 1473201 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||| | | |||| | ||| || | ||| | || | | | ||| ||||| || | Sbjct 1473200 GATTCTT---CTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAG 1473144 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 ||||||| || || ||| || |||||||| || || ||| ||||| | | || | Sbjct 1473143 AATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGA 1473084 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | || | | || | | || || ||| || |||||| || || || | Sbjct 1473083 CTTCTTTCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAGA 1473024 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAA 19444 | || | || | | || || ||||| || || || ||||| | || ||||| | Sbjct 1473023 AGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGGA 1472964 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 |||| || | ||| || ||||| | ||||| || || || ||||| || |||| Sbjct 1472963 GGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTACA 1472904 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | | ||| || | | ||||||| || || || || Sbjct 1472903 TCTCCCAGATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || | | ||| || | ||||||| Sbjct 6776014 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 6776073 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||||||||| || | || | ||||| || ||| Sbjct 6776074 TTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 6776133 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || || || | ||||||| ||| | ||||||||| ||| Sbjct 6776134 ACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATATT 6776193 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||||||||||| || |||| || || ||||| || Sbjct 6776194 CCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561887722608960