Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq32 170 2e-37 seq78 161 8e-35 seq1 143 2e-29 seq16 123 2e-23 seq39 93.3 3e-14 >seq32 Length=4239389 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || |||||||| ||||| |||||||||||||| | |||| | | || || Sbjct 977306 ACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 977365 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| ||||| || | | |||||| ||||| |||||||| |||||||||||| Sbjct 977366 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 977425 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | || ||||| ||||||| || || |||| |||||| Sbjct 977426 ATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTG 977485 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||||||| ||||| ||||| Sbjct 977486 CCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || ||||||||||| || | || | |||| ||||||||| Sbjct 976628 TGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGC 976687 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||||||||| || ||||| || ||||| |||||||| || Sbjct 976688 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 976747 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || |||| ||||| | |||| || || || ||| Sbjct 976748 GCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 976807 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 976808 AACGTCTTCACGAAAATCTGCAT 976830 >seq78 Length=1515738 Score = 161 bits (178), Expect = 8e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | |||||| | ||| || |||||||| |||||||||||||| |||||||| | Sbjct 1185563 TTCCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAG 1185622 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| |||| |||| || | |||||| || || || || | | || || || || | Sbjct 1185623 CGAGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAG 1185682 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||||||||| |||||| | || | ||||||||| |||| | Sbjct 1185683 GGATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAA 1185742 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | ||||| ||||| | |||||| ||||| || ||||| Sbjct 1185743 CCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 149 bits (164), Expect = 5e-31 Identities = 171/229 (75%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| || || || || || || ||||| ||||| || || || |||| Sbjct 1184880 TTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGG 1184939 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| || |||| |||||||||||||| || || ||||| | |||||| || || | Sbjct 1184940 CTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTG 1184999 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||||||||||||||| || || ||| | || | || || || | || | Sbjct 1185000 GGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAA 1185059 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 1185060 CTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || ||||| ||||| |||||||| || || | ||| | | |||| || Sbjct 1185355 ACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCA 1185414 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| || || || | | |||||| || || ||||| || ||||||||||| Sbjct 1185415 AGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTTATCTTGG 1185474 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || ||||| ||||||| || | |||| ||||| Sbjct 1185475 ATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATGGTTTTA 1185534 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || || || ||||| Sbjct 1185535 CCAGTGAGGGTTTTCACGAAGATTTGCAT 1185563 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| ||||| || ||||||||||| | || | |||| || | ||| Sbjct 1185133 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGC 1185192 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| ||||| | ||| || || || |||| || || || |||||||| || Sbjct 1185193 TTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTA 1185252 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||||| |||| || || | || | ||||| || || Sbjct 1185253 GCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTTTTCCCCGTA 1185312 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || ||||| Sbjct 1185313 AGTGTTTTGACGAAAATTTGCAT 1185335 >seq1 Length=8341428 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || |||||||| || ||||||||||||||||| | |||| | | || || | |||| Sbjct 3817640 TGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGC 3817699 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| || || || || ||||| ||||| ||||| ||||| || Sbjct 3817700 TTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTG 3817759 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | |||||| || | ||||| ||||| |||| ||| || ||||| Sbjct 3817760 GCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTA 3817819 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||||||||| ||||||||| Sbjct 3817820 AGTGTTTTTACAAAGATCTGCATG 3817843 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | ||| | ||| | |||||||| || || ||||| || ||||| || | Sbjct 3816715 TTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG 3816774 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| || |||| |||| ||||| || || || ||||| | ||| || || || | Sbjct 3816775 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 3816834 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| ||||||||||||||| || || | || | || || || | || | Sbjct 3816835 GAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGA 3816894 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | || || || || ||||| || || ||||||||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| ||||| || || || || || |||||||| || | ||||| | | Sbjct 3816956 ACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCC 3817015 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATC-GGGCGGAATGCCTTCTT 101372 ||| ||||| || || || || || || | | ||| || || ||| ||||||||||| | Sbjct 3817016 ATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCT 3817075 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | || ||||| || || || | || | |||||||| | || || || | |||| Sbjct 3817076 TGTCCTGAATCTTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGA 3817135 Query 101433 CCGTTTTGCCGGTTAAAGTTTTT-AC-AAATATCTGCAT 101469 || || ||||| | ||||||| || ||| || ||||| Sbjct 3817136 TGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq16 Length=5655878 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | || ||||| ||||| || || || ||||| ||||| Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | | || || | ||||| || || || ||||||||||| || || || || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || ||| || ||| | || | || || || | || ||| Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACT 2199209 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||||| || || || |||| ||||| || || |||||||||||| Sbjct 2199208 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTT 2199158 >seq39 Length=3648736 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| || |||||||| || || ||||| || || ||||| || | |||| |||| Sbjct 1061518 AAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCGACCATCT 1061577 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||||||||| ||||| || || | ||| || || || ||||| ||||| || || Sbjct 1061578 TCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 1061637 Query 101378 TGAATT 101383 || ||| Sbjct 1061638 TGCATT 1061643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396126440112648