Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14 102 6e-17 seq78 100 2e-16 seq32 93.3 3e-14 seq1 87.8 1e-12 >seq14 Length=6093421 Score = 102 bits (112), Expect = 6e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135 |||| ||| ||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1720061 ATTTTCTCAAGAATCATCTGAGCGATCCTGTCGCCCGCTTTCACCTCAAAGTCCACATCG 1720002 Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195 || ||||||||||| | ||||||||| || |||||||| |||| || ||||||||| Sbjct 1720001 GAGTGATTGAACAGTATCACTCCCACAGGGCCTCTGTAATCAGCATCAATAACACCAGCA 1719942 Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 || || ||||| ||||| | || | |||||||| ||||| Sbjct 1719941 CCAACATCGATCGCATGCTTCAAAGCCAAACCAGAGCGCGGCGC 1719898 >seq78 Length=1515738 Score = 100 bits (110), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || |||||||| || || || | |||| | | | Sbjct 1184891 AGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCTAGAGTCCTA 1184950 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 | || ||||| |||||||| || || |||| || |||||| || |||||| | || || Sbjct 1184951 CCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGGATC-CCTTC 1185009 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 || || |||||| || ||| | | | | ||||| ||| || |||| || Sbjct 1185010 TTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACTTCCAAAGT 1185069 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||||||| |||||||| |||||||| ||||| Sbjct 1185070 GATTG-TTTTCCCGTTAAAGTTTTCACAAAAATTTGCAT 1185107 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| |||||||| | ||| | || | || || | |||||| || ||||| Sbjct 1185145 TCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAG 1185204 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || |||| |||||| ||||||||||| |||||| ||| ||| | Sbjct 1185205 ATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTA 1185264 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||| | ||||| ||||| ||||| | ||||| || Sbjct 1185265 TCGATTGTGTCAGAGCTTTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACG 1185324 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1185325 AAAATTTGCAT 1185335 >seq32 Length=4239389 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || ||||| ||||||||||| | || |||| |||| || Sbjct 977305 CACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 977364 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||||| ||||| || || | |||||| || | |||| |||||| || || Sbjct 977365 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 977424 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| || ||| | | | || || |||||||| | || || ||||| Sbjct 977425 AATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTT 977484 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||||||| || || |||||| Sbjct 977485 GCCAGTGAGAGTTTTTACGAATATTTGCATC 977515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || ||||||||||||| | | ||| | || ||||| ||| Sbjct 976628 TGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGC 976687 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||||| ||||||||| | |||| ||||| ||||| |||||| Sbjct 976688 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 976747 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| || || |||| || || || || || || Sbjct 976748 GCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 976807 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| Sbjct 976808 AACGTCTTCACGAAAATCTGCAT 976830 >seq1 Length=8341428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||||||||| | || |||| |||| || | ||||| || || || Sbjct 3817652 TCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 3817711 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || || |||| ||||| || ||||| || |||||| ||| || Sbjct 3817712 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTTAACGTTG 3817771 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||||||||| | || ||||| ||||| || | ||||||||| Sbjct 3817772 TCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACA 3817831 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 3817832 AAGATCTGCAT 3817842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||||| ||| |||| | || ||||||||||| ||||| || Sbjct 3817424 TCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCGAAG 3817483 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| || || || | ||||| || ||||| || ||||| || || | Sbjct 3817484 ATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 3817543 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||| | || || || ||||| || | ||| || ||| Sbjct 3817544 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 3817603 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 3817604 AAAATTTGCAT 3817614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380791522810872