Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 113 8e-20 >seq23 Length=5684809 Score = 113 bits (124), Expect = 8e-20 Identities = 550/863 (64%), Gaps = 24/863 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| ||||| ||||| ||||||||||| || |||||||| | |||||| || |||| Sbjct 1473732 TGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAACTCC 1473673 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGC-AG 47958 || | || ||||| | ||||| | | || ||| ||||||| | | Sbjct 1473672 ATCCAATCAAATGGGTTTTGAACATTATAGATTT-TCTCGTACCCCAATGTTCCAACCAA 1473614 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||||| || | || ||||||| ||| | ||||| || | || | Sbjct 1473613 CCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAAGAGC 1473554 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||||||| | | || ||| ||||||| | |||||| ||| |||||||| Sbjct 1473553 CACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAATCTG 1473494 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | | || || ||| ||| || | || | | ||| | || || ||||| Sbjct 1473493 CCTCACTCGATCCTCACTCAATTTCTTCCTCAA---CAATGAATACAACAAACAAGCAAA 1473437 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 || | || | ||||| || || || | |||| ||||| | |||||||| Sbjct 1473436 ATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCAT 1473377 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | ||| | | ||| | ||||||||| | |||| || |||||||| || ||||| Sbjct 1473376 TAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTC 1473317 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG-TCTGAGATCCAGG 48317 || || || || | || ||| | || || || | || | | | ||||| Sbjct 1473316 GACGCAAGCAAATGCCAAAATCCGCTCAGCAAATGA---GTCCGTGCTATCA-ATCCACT 1473261 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC- 48376 | |||||| || ||||||||||| | ||||| | || || || || | || ||| Sbjct 1473260 TCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCC 1473201 Query 48377 --TTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 ||||| ||||| | ||| | ||| || | ||| || | ||||||| Sbjct 1473200 GATTCTT---CTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTA---TACATCT 1473147 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 |||| || | ||||| ||| || || || || |||||||| ||||| ||| || | Sbjct 1473146 CAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTT 1473087 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | |||||| | ||| | ||| ||| | ||||| || || ||||| || || || Sbjct 1473086 GGACTTCTTTCATGAACCG-TCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCG 1473028 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||||||||| | | | ||| || ||||| | || | | || ||| Sbjct 1473027 AAGAAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGG 1472968 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | ||||| || || || ||||| | ||||||||||| || || ||||| ||| Sbjct 1472967 CGGAGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTG 1472908 Query 48671 TACATGCCCCATATGTCCGGATA 48693 ||||| |||| || | ||||| Sbjct 1472907 TACATCTCCCAGATTTGAGGATA 1472885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931166428149760