Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq29 123 3e-23 seq34 105 8e-18 >seq29 Length=4237707 Score = 123 bits (136), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||| || || || ||||| ||| | || |||||| | || |||||| Sbjct 3793443 CCGGGTACCGGAAAAACTCTTCTGGCCCGGGCCGTGGCTGGTGAAGCTGGCGTGCCATTC 3793502 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || ||||| || | ||||| || ||||||||||||||||||| || || Sbjct 3793503 TTCTCCTGTGCTGCCTCAGAGTTTGTAGAATTGTTTGTTGGTGTGGGTGCATCGAGAGTC 3793562 Query 175435 CGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | ||||| | ||| | ||| | || || ||||| |||||||||||||| Sbjct 3793563 CGGGACTTGTTTGACAAAGCCAAGTCCAAAGC-TCCTTGCATTGTTTTCATTGATGAGAT 3793621 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| ||||| | || | | || ||| | | ||||| |||||||| || Sbjct 3793622 TGATGCTGTGGGGAGACAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAGAGCA 3793681 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| ||| | || || |||||||| ||| Sbjct 3793682 AACGATCAATCAGCTATTGACTGAAATGGATGGGTTT 3793718 >seq34 Length=3787072 Score = 105 bits (116), Expect = 8e-18 Identities = 207/305 (68%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAG 175404 ||||| || |||||| || ||||||||| || || | | | ||||| || Sbjct 2304653 GCCATTGCTGGTGAAGCAGGTGTCCCATTTTTCTCTATATCGGGTTCTGAGTTTGTTGAA 2304712 Query 175405 ATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAAT 175464 |||||||||||| | ||||| | ||||| |||||||| | | ||| |||||| Sbjct 2304713 ATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATCTCTTCAAGAAGGCCAAGGAAAAT 2304772 Query 175465 CAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG- 175523 ||| || ||||| || ||||||| |||||||| || || ||| | || |||| Sbjct 2304773 GCACCTTGCATTGTGTTTGTTGATGAAATTGATGCTGTTGGACGTCAAAGAGGCACTGGA 2304832 Query 175524 --TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATG 175581 |||| | |||||||| ||||||||||| |||| || || || || || ||| Sbjct 2304833 ATTGGT---GGTGGGAATGACGAACGAGAACAAACACTTAACCAGCTTCTGACTGAAATG 2304889 Query 175582 GATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATC 175641 ||||| || || | ||||| ||| | || ||||| ||||| || | | || || Sbjct 2304890 GATGGGTTCGAGGGAAACACTGGGATTATTGTAATTGCTGCCACAAACAGGGCAGACATT 2304949 Query 175642 CTTGA 175646 ||||| Sbjct 2304950 CTTGA 2304954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596334969176320