Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-26 seq32 122 2e-22 seq1 95.1 2e-14 >seq78 Length=1515738 Score = 134 bits (148), Expect = 2e-26 Identities = 141/184 (77%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||||| || || ||| ||| || ||||| || || || ||||| ||||| Sbjct 1184926 AATGTTATAGTCGGCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCT 1184985 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || || |||||||||||||| || || | || | ||| ||| || Sbjct 1184986 CTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGT 1185045 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| ||| ||||||||| | ||| || ||||| || |||| ||||| ||||| ||||| Sbjct 1185046 ATCTGAACTCTCAACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTG 1185104 Query 193358 CATT 193361 |||| Sbjct 1185105 CATT 1185108 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| |||| |||||| || | || || |||||| Sbjct 1185327 AATTTGCATTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATT 1185386 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | ||| || | |||||| || || ||||||| |||||||| Sbjct 1185387 GTAGTCCGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTG 1185446 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || || ||||||||||| || || | || | ||| || ||||| || Sbjct 1185447 GTCAGGGGGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGA 1185506 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||| || || |||||||| || || ||||| || || ||||||||| Sbjct 1185507 GCTTTCCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||| | |||||||| | | ||||| || || || | || | ||| || ||| || Sbjct 1184645 ATTCAAATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTG 1184704 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || | ||| || ||||||||||| || ||||| | ||| || || Sbjct 1184705 TAATCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGG 1184764 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || || || || || || ||||| | || | || ||| || || || Sbjct 1184765 TCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAG 1184824 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || | || || || || ||||| | || || ||||||||||||||| Sbjct 1184825 CTCTCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 >seq32 Length=4239389 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| |||| ||||| |||| || || |||||| Sbjct 977050 AATTTGCATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATT 977109 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | | || | || || | || || || |||||||| | ||||||||| Sbjct 977110 GTAGTCAGCGAGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTG 977169 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| || ||||||||||| | || | ||| ||| ||||| || Sbjct 977170 GTCAGGTGGAATACCTTCCTTGTCTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGA 977229 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || ||||| || ||||| || || || || || |||||||||||||| Sbjct 977230 ACTCTCCACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||| |||| ||| | ||||| || || ||||| Sbjct 977279 ATTTGCATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTG 977338 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||||| || || | ||| || || ||||| || | |||||||| Sbjct 977339 TAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGG 977398 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||||||||| || || | || | ||| ||| ||||| || Sbjct 977399 TCGGGTGGAATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAG 977458 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || |||||||| ||||||||||| Sbjct 977459 CTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || || || || | || | |||||| ||||| || || | Sbjct 976604 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCC 976663 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||| ||||| ||||| || | |||||||||||| ||||| Sbjct 976664 AATGTCCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGA 976723 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || ||||| ||||| || || | || | ||| || || || ||| || ||| Sbjct 976724 ATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACT 976783 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || || ||||||| ||| || || || || |||||| Sbjct 976784 TCCAATGTGATTGTCTTCCCTGTTAACGTCTTCACGAAAATCTGCATT 976831 >seq1 Length=8341428 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| ||| || ||||||| | |||| ||| || | ||| || ||||| || Sbjct 3817879 CTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 3817938 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || |||| || ||||| || || || ||||| ||||| || ||||||| || | || Sbjct 3817939 GATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTTGACGTT 3817998 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 || || ||||||||||| || || || || || || || ||||| || || || || Sbjct 3817999 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGTCTTAAC 3818058 Query 193349 AAATATTTGCAT 193360 || |||||||| Sbjct 3818059 GAAGATTTGCAT 3818070 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| || || || | | || || || || || |||||||| ||| Sbjct 3817688 TCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTA 3817747 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | || |||||| ||||||||||| || || || || || Sbjct 3817748 TCCTGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATC 3817807 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| || ||||| Sbjct 3817808 GTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899300565924480