Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 165 1e-35 seq32 154 2e-32 seq78 114 2e-20 seq1 102 1e-16 >seq23 Length=5684809 Score = 165 bits (182), Expect = 1e-35 Identities = 433/656 (66%), Gaps = 18/656 (3%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| |||||| || ||| ||||||| |||||||| ||||| |||| ||| || || Sbjct 1473738 GCCTTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATC 1473679 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATAT---TTTTCTTGTATTA-ATTC 17976 || | ||| |||||||||| || || | | ||| |||||| ||| | | Sbjct 1473678 AACTCCATCCAATCAAATGGGTT-----TTGAACATTATAGATTTTCTCGTACCCCAATG 1473624 Query 17977 GTATAAT-AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | || || ||||| || |||||||| | ||||| ||||||||| | |||||| | Sbjct 1473623 TTCCAACCAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTC 1473564 Query 18036 CTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | | || | || | ||||||| || ||||| ||||||| || || | ||| Sbjct 1473563 CAACAAGAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCG 1473504 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTAT-AATATAAT 18154 | | || | | || | | | |||||| || | | | || |||| || Sbjct 1473503 TAACAATCTGCCTCACTCGATCCTCACTCAATTTCTTCCTCA----ACAATGAATACAAC 1473448 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||||||| || | ||||||||||| || || |||||||| ||||| Sbjct 1473447 AAACAAGCAAAATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTC 1473388 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | ||| || || || |||||||| || ||| Sbjct 1473387 AATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAGCAGAAACTACCTGAGAAG 1473328 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || ||||| ||||| || || || | | | |||||||| || | | |||| Sbjct 1473327 AAAATTCCCTCGACGCAAGCAAATGCCAAAATCCGCTCAGCAAA--TG-AGTCCGTGCTA 1473271 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| || ||||| || | | | ||| || | | | || |||||| Sbjct 1473270 TCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCA 1473211 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | ||||| || || || ||||||| || |||||||| || | | | | |||| Sbjct 1473210 TGAAACAGCCGATTCTTCTCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATAC 1473151 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 || |||||||| ||| | || ||| || ||||| | ||| || | ||| || || Sbjct 1473150 ATCTCAGAATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTC 1473095 >seq32 Length=4239389 Score = 154 bits (170), Expect = 2e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || |||||||| || || || || || || ||| Sbjct 976998 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 976939 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| |||||| ||| ||| || |||||||||| Sbjct 976938 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTAGCAGATTATAAC 976879 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || ||| || | ||| | ||||||||| | |||| Sbjct 976878 AT-TCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATT 976841 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||| || || | || || || |||| Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||||||||| || ||||| || || || || ||| Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACCAA 977167 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||| | |||| ||| |||||||||||||| || Sbjct 977166 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGA 977132 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | ||||| ||||| || || | || || ||| ||| Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||||||||| ||||| || || || ||| Sbjct 977454 GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 977395 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||| || || || | |||| | | ||||| | Sbjct 977394 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACA-- 977337 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGA 156038 ||||||||| || | || || ||||| ||| | ||| Sbjct 977336 ATATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGA 977299 >seq78 Length=1515738 Score = 114 bits (126), Expect = 2e-20 Identities = 156/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| || || |||||| | || || || ||||| || ||| Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGGAAAA-CAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||| || |||||||||||||| || || ||||| || Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||||||| || |||||||| | |||||| || ||| || | || ||||| Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | || || || || ||||| Sbjct 1184929 CAT-TCAAAAGGAATCAACTCTCCACTTGGTGTT 1184897 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | |||||| | || || ||||||||||||||||| || ||| || Sbjct 1185336 AATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTC 1185277 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || ||| ||| || ||||| || || || | || || || || Sbjct 1185276 TGACACAATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAGTTCCCCCGGACCA 1185217 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||||||||||||| Sbjct 1185216 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGAT 1185180 Score = 93.3 bits (102), Expect = 6e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||| ||||| || || ||||| || ||| || Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || ||||| ||| || ||||||||||| || || || || || || Sbjct 1185504 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACCA 1185445 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| || ||||| || || |||||| | | ||||| | || || || Sbjct 1185444 ACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 1185385 Query 156002 TATATCCAAAG 156012 ||| || |||| Sbjct 1185384 TAT-TCAAAAG 1185375 >seq1 Length=8341428 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||| || ||||||||||| || || || || || || || ||| Sbjct 3816716 AATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGTTC 3816657 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||||||||| ||||| || || || || || || || ||||| || Sbjct 3816656 TGATACAATCGACAACGTGAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGACCA 3816597 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | |||||| || ||||| |||||| || || | | |||||||| Sbjct 3816596 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCTGATTATAA 3816537 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 3816536 CATTCAGAAGGAGTCGACCCTTCA 3816513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731584154742400