Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq78 129 1e-24 seq32 118 2e-21 seq39 93.3 8e-14 seq11182 84.2 4e-11 >seq78 Length=1515738 Score = 129 bits (142), Expect = 1e-24 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || | |||||| || || || || | ||| | || ||| || || ||||| || Sbjct 1184879 ATTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGA-ATGTTATAGTC 1184937 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || | |||| |||||||| |||||||| || || ||||||||||| || || Sbjct 1184938 GGCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGG 1184997 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||| || ||| || |||||| || | |||||| || Sbjct 1184998 TGGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTC 1185057 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || ||||| || ||||| ||||| | ||| || |||||| Sbjct 1185058 AACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||| | || ||||| ||||| | || ||| || ||||| || || Sbjct 1185334 ATTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGA-ATATTGTAGTC 1185392 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || || |||| || | |||||||||||| || |||| |||||||| ||||| Sbjct 1185393 CGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGG 1185452 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || ||||||||||| || ||| || |||||| || | ||| || ||| Sbjct 1185453 GGGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTC 1185512 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||| || |||||||||||||| | ||||| | || || |||||| Sbjct 1185513 CACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 ||||||||| | |||||| | || | || | || | ||| ||| || || || |||| Sbjct 1184650 AATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGA-ATGTTGTAAT 1184708 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | | ||||| ||| |||| ||||||||||| ||||| || || | ||| || || |||| Sbjct 1184709 CGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAG 1184768 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || || || || || || || |||||| || || ||| || | ||||| | Sbjct 1184769 GAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCT 1184828 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || | || || || || || || || || || | |||||| |||||| Sbjct 1184829 CAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 >seq32 Length=4239389 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || ||||| | ||||| || || ||||| || ||| Sbjct 977057 ATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCA 977116 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || ||||||||||| || | ||||||||| |||||| Sbjct 977117 GCGAGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGT 977176 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || |||||||||||| || ||||| || | ||| || || Sbjct 977177 GGAATACCTTCCTTGTCTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCC 977236 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | || || | |||||| ||||| Sbjct 977237 ACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| |||||| ||||||| ||||| || |||| |||||||| || |||||||| Sbjct 976639 CTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGCTTTCCAGCAAA 976698 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| | |||||||||||| || || || || ||||| ||||| || || || ||||| Sbjct 976699 GATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATT 976758 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | ||||| ||| ||||| | || || || || || ||||| || || | Sbjct 976759 GTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAACGTCTTCAC 976818 Query 192525 AAATATCTGCATT 192537 || ||||||||| Sbjct 976819 GAAAATCTGCATT 976831 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 |||||||| || || | || ||| || || |||||||| | || || | |||| || Sbjct 976850 ACTAAATGCAACGTTGATTCCTTTTGA-ATGTTATAATCTGCTAGAGTCCTGCCATCTTC 976908 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | || ||||||||||| || || |||||||| || ||||| || || || |||||||| Sbjct 976909 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTG 976968 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || ||| ||| |||||| || | ||| || || ||||| | ||||| ||||| Sbjct 976969 GATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTT 977028 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| | ||| || ||||| Sbjct 977029 CCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 102 bits (112), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || ||||| | |||| || || |||||| ||||| Sbjct 977285 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCG 977344 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | ||| |||||||||||||| | |||||||| || ||| Sbjct 977345 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 977404 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || || ||||| || | ||| || ||| Sbjct 977405 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCC 977464 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || || ||||| ||||| | ||||| | ||||| ||||| | | |||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTAAGAA 977524 Query 192547 A 192547 | Sbjct 977525 A 977525 >seq39 Length=3648736 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATA 192362 ||| |||| || ||||| | || || || || | || | ||| ||| || || ||||| Sbjct 1061497 ATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGA-ATGTTATA 1061555 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||| | | ||||| |||| |||||||| ||||||||||| ||||||||||| || || Sbjct 1061556 ATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTC 1061615 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||| || || ||||| || || || ||| Sbjct 1061616 AGGAGGAATACCTTCCTTGTCCTGCATT 1061643 >seq11182 Length=218 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| |||||||||||||| | ||| ||||| || || || ||||| || || || || Sbjct 217 AATTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 158 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || || ||| || | ||| || ||||| || || || || ||||||||| Sbjct 157 ATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTTA 98 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||| || || ||||| Sbjct 97 CCCGTCAGGGTCTTAACGAAAATTTGCAT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984083124116400