Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq78 138 2e-27 seq32 127 4e-24 seq39 102 1e-16 seq11182 93.3 8e-14 >seq78 Length=1515738 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || ||||| ||||| | || || |||||| || || Sbjct 1185334 ATTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCC 1185393 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | |||||||||||| ||||||| |||||||||||||| Sbjct 1185394 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGG 1185453 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || ||| || |||||| || ||||| || ||| Sbjct 1185454 GGAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCC 1185513 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || |||||||||||||| | ||||| | ||| || |||||| Sbjct 1185514 ACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | || || ||| ||||| || Sbjct 1184879 ATTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1184938 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | | || |||||||| |||||||| ||||| |||||||||||||| ||| Sbjct 1184939 GCTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGT 1184998 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| || |||||| || |||||||| || Sbjct 1184999 GGGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCA 1185058 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| || ||||| || ||||| ||||| | || || |||||| Sbjct 1185059 ACTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 171831 AGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATA 171890 || |||| ||||||||| | ||| || | || | || | || | ||| || ||| Sbjct 1184643 AGATTCA-AATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATG 1184701 Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 || ||||| | || | ||| | || ||||||||||| ||||| ||||| | ||| || Sbjct 1184702 TTGTAATCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGC 1184761 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 |||||||| || || || || || || || |||||| || || ||| || || ||| Sbjct 1184762 TGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCT 1184821 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | || || || || || || || || || | ||||| |||||| Sbjct 1184822 GAGCTCTCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 >seq32 Length=4239389 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| | ||||| || || |||||| || || Sbjct 977057 ATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCA 977116 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | || |||||||||||||| | |||||||||||||||| Sbjct 977117 GCGAGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGT 977176 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || |||||||||||| || ||||| || ||||| || || Sbjct 977177 GGAATACCTTCCTTGTCTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCC 977236 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | || || | ||||| ||||| Sbjct 977237 ACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | |||||||| || || | || || ||| ||||||||| Sbjct 976829 ATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCT 976888 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | | || || | || |||||||||||||| || ||||||||||| ||| Sbjct 976889 GCTAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGT 976948 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| ||| |||||| || ||||| || || Sbjct 976949 GGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCC 977008 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||| ||||| || ||||| | || || ||||| Sbjct 977009 ACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || ||||| | |||| || || ||||| ||||| Sbjct 977285 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCG 977344 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| || | ||| ||||||||||| || | ||||||||||| ||| Sbjct 977345 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 977404 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || || ||||| || ||||| || ||| Sbjct 977405 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCC 977464 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | ||||| | |||||| ||||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq39 Length=3648736 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| || ||||| | || || || || | || | ||| || ||| |||| Sbjct 1061495 TCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTAT 1061554 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | | ||| | || |||||||| ||||||||||||||||||||||| |||| Sbjct 1061555 AATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGT 1061614 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||| || || ||||| || || || ||| Sbjct 1061615 CAGGAGGAATACCTTCCTTGTCCTGCATT 1061643 >seq11182 Length=218 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| ||||||||||| || | ||| |||||||| || || ||||| || || || || Sbjct 217 AATTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 158 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || ||| || ||||| || ||||| || || || || ||||||||| Sbjct 157 ATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTTA 98 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || |||| ||| || ||||| Sbjct 97 CCCGTCAGGGTCTTAACGAAAATTTGCAT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904780010011200