Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51 145 2e-29 seq29 120 9e-22 seq84 109 2e-18 seq7 98.7 3e-15 >seq51 Length=2507997 Score = 145 bits (160), Expect = 2e-29 Identities = 287/422 (68%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| ||||| || || |||||||| ||| | Sbjct 356621 TAAAACCATCCATTTCAGTGAGCAACTGATTCAGTGTCTGCTCTCTTTCATCGTTT---C 356677 Query 288998 CTCTTGAATCACCCGAATCGCT---CCttt--ttttACCAACAGCATCAATTTCGTCAAT 289052 ||| |||| ||| || ||| | || |||||||||||||||| || ||||| Sbjct 356678 CTC------CACC--AATGCCTGTGCCTCTCATTCTACCAACAGCATCAATCTCATCAAT 356729 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 ||||| | ||| || ||||| | | || | ||||| ||||| || | || || Sbjct 356730 GAAAACTAAACATGGGGAATTGGCTTTTGCCTTGTTGAATAAATCTCTCACTCTTGAGGC 356789 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 |||| ||||| |||| |||| || |||||| | || | | ||| | || Sbjct 356790 CCCAACCCCAACGAACATCTCTATGAACTCAGAACCAGAGAGAGAGAAGAAAGGAACTCC 356849 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||| | || || |||| | ||||| |||||||| ||||| || |||| Sbjct 356850 AGCTTCCCCTGCAATGGCTCTAGCCAACAAAGTCTTTCCTGTTCCTGGTGGCCCAACTAA 356909 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| || ||||||| | |||| ||| | | | | ||||| || |||| ||||| Sbjct 356910 GAGAACCCCTTTTGGTATTCTTGCTCCAACTGCTGAAAACTTCTCTGGAGTCTTCAAAAA 356969 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || ||||| || | | || | ||||| |||||| || ||||||||| |||| || Sbjct 356970 CTCCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCAGCTACATCATCAAATGT 357029 Query 289353 AA 289354 || Sbjct 357030 AA 357031 >seq29 Length=4237707 Score = 120 bits (132), Expect = 9e-22 Identities = 280/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||| | ||||| || || |||||||| ||| Sbjct 3793718 AAACCCATCCATTTCAGTCAATAGCTGATTGATCGTTTGCTCTCTCTCATCATTCCCACC 3793659 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | ||| | | ||| | | | || ||||||||||| || |||||||||| Sbjct 3793658 TCC---AAGACCTGCCCCTCTC---TGTCTCCCCACAGCATCAATCTCATCAATGAAAAC 3793605 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||| | || | ||| |||| || || | || | ||||| || | Sbjct 3793604 AATGCAAGGAGC-TTTGGACTTGGCTTTGTCAAACAAGTCCCGGACTCTCGATGCACCCA 3793546 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| ||| ||||||||| || || || | || || | ||||| || ||| Sbjct 3793545 CACCAACAAACAATTCTACAAACTCTGAGGCAGC-ACAGGAGAAGAATGGCACGCCAGCT 3793487 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || || |||| |||||||| || || || || || |||||||| | | ||| Sbjct 3793486 TCACCAGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCCGGTGGTCCAACAAGAAGA 3793427 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || ||||| | ||| || ||| || | || || ||||| |||| || || || Sbjct 3793426 CACCCTTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGATTCTTCAAGAAATCA 3793367 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||| | | |||| || || | ||| ||| || |||||||||||||| Sbjct 3793366 ACAACTTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAAAGT 3793311 >seq84 Length=1137297 Score = 109 bits (120), Expect = 2e-18 Identities = 324/493 (66%), Gaps = 5/493 (1%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| | ||| ||| |||||| ||||| | |||||| ||| | || Sbjct 583214 ATCAAATCGACCAGGTCTCAATAAAGCTTTGTCTAAAATATCAGGTCTGTTAGTTCCAGC 583273 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | |||||||| | || | ||| |||||||| || | |||||| || Sbjct 583274 AAGTACAACAACACCAGAAGTAGTCCCAAAGCCATCCATCTCAACCAACAATTGATTTAG 583333 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACC 289031 || ||| | |||||||| |||||| ||| | ||| || ||| | | ||| Sbjct 583334 AGTACTTTCACGCTCATCATTAGAACCTGA-GAAACCTCCGCGTC-CTC-TGGCTCGACC 583390 Query 289032 AACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAA 289091 || |||||||| || ||||| ||||| | || |||| | || || || | ||| Sbjct 583391 AATCGCATCAATCTCATCAATAAAAATTATACTAGGAGCACACTGCCTGGCTTCTTGAAA 583450 Query 289092 TAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGA 289151 || | ||| || | |||| ||||| ||| ||| |||| || | || || ||| | || Sbjct 583451 CAAGTTTCTAACCCTTGATGGTCCAACACCGACAAACATCTCCATGAAATCTGAACCAGA 583510 Query 289152 TACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 || | || ||||| | ||| || ||| || || ||| | ||||| | ||||| | Sbjct 583511 TA-TAGACATGAAAGGCACACCTGATTCACCAGCAGTTGCTTTTGCCAGTAAGGTCTTTC 583569 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270 | || ||||| ||||| | || || | |||||||| | || ||||| || | Sbjct 583570 CAGTGCCAGGAGGTCCAACCAAAAGTGCGCCCTTTGGAATCTTAGCCCCCAATTCCTCGT 583629 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 |||| ||| |||| | || | ||| | ||| | ||| | |||||||||||||| Sbjct 583630 ATTTTCTAGGATTCTTCAGGAAGTGTACGAACTCCATGATTTCCTGTTTTGCCTCATCAC 583689 Query 289331 ATCCTGCTACATC 289343 | || || ||||| Sbjct 583690 AACCAGCAACATC 583702 >seq7 Length=7328097 Score = 98.7 bits (108), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||||| || ||||||||| | |||| | | || |||| || ||| Sbjct 1952710 ACAGACATGGATCCTATAAGCATCACTTTGGTCAAACAACCTCTCCTTTAGAAAATGAGC 1952651 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||| || ||||||||||| || || || || ||||||||||| || Sbjct 1952650 AGCACCATGGGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACG 1952591 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || |||||| ||||| || | || || | || |||||| | || ||| Sbjct 1952590 TGACCGACCCTCAGCAGGTTGTCTCGTAAGGATCTGCACAGGACCCCTTCCACGTGAATG 1952531 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 | || |||| ||||||||||| || | |||||| ||| ||||| | ||| || Sbjct 1952530 TATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTATGTTGGACCAAGGAATAT 1952474 Score = 96.9 bits (106), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| ||||||||| || || ||||| ||||| |||||||| | |||||| || Sbjct 6775993 AAATTACCTTTCCTCTTGCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACC 6776052 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | |||||||| | ||||||||| || || ||||| ||||| ||||||| Sbjct 6776053 CGCAGCATAGGCAAAATACCATTAGATGTTCCATTTGTTCCACGAATAT 6776101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471224262491368