Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16 131 2e-25 seq32 122 8e-23 seq78 107 2e-18 seq1 105 6e-18 seq7 91.5 1e-13 seq39 82.4 7e-11 >seq16 Length=5655878 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| ||||| ||||| || || || |||||||| || | Sbjct 2199159 ACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAGAGC 2199218 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||| || | || | || || ||||||||| ||||| |||||||| || || || Sbjct 2199219 TCCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCCCCGGAC 2199278 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || |||||||| || ||||| || ||||| ||||| ||| | | || || Sbjct 2199279 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGACTAC 2199338 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||| ||||||||||| || ||| | ||| | || | | ||||||| Sbjct 2199339 AACATTCAGAAGGAATCGACCCTCCACCTTGTGCTTCGTCTCAGAGGAGGCG 2199390 >seq32 Length=4239389 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || || ||||| ||||| | ||||| || | | Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| ||||||||||| || || || || || || || ||| Sbjct 976998 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 976939 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || ||||| || ||| || | | ||||||||||| Sbjct 976938 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTAGCAGATTATAAC 976879 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || | || || ||| | ||||||||||| || Sbjct 976878 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGG 976832 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | ||||| || || || ||||| || || ||||| || ||| | | Sbjct 977515 GATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTC 977456 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || | || || |||||| ||||| ||||| || || || ||||| || Sbjct 977455 TGATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 977396 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | |||||||| || || || || ||||| ||| | | ||||| || Sbjct 977395 ACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAA 977336 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| ||||| || |||||| | || | ||||| || Sbjct 977335 TATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 977288 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| |||| || || || || || | ||||| ||| | Sbjct 976830 ATGCAGATTTTCGTGAAGACGTTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTCA 976771 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||||||||| || || ||||| |||||| Sbjct 976770 GACACCATCGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCAA 976711 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||||||||| || || || |||||||| ||| || | || | ||||| | Sbjct 976710 CAGAGACTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCG-GACA-TTGGCTGATTACA 976653 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || || || || || || || ||| | || | || |||| || ||| Sbjct 976652 ATATCCAGAAAGAGTCCACCCTCCACCTTGTCCTCCGCCTGCGTGGTGGC 976603 >seq78 Length=1515738 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || ||||||||||| | || || ||| | | Sbjct 1185335 ATGCAAATTTTCGTCAAAACACTTACGGGGAAAACTATTACATTAGAGGTTGAAAGCTCT 1185276 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||| |||||||| || ||| | || || || || Sbjct 1185275 GACACAATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAGTTCCCCCGGACCAG 1185216 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || | ||||||||||| || || ||||| || || | || ||| | | ||||| || Sbjct 1185215 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGA-TGGACGGACACTAGCCGATTACAA 1185157 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||||||||||| || || ||| | ||| Sbjct 1185156 CATTCAAAAGGAATCCACTCTTCACCTTGTG 1185126 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| |||| || ||||| || || | ||||| || | Sbjct 1185107 ATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTCA 1185049 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||||| ||||| |||||||| || || || || ||| Sbjct 1185048 GATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 1184989 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || || |||| ||| || | | | || |||||| Sbjct 1184988 CAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAAC 1184929 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||||||||| | || ||||| Sbjct 1184928 ATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGG 1184882 >seq1 Length=8341428 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || | || || || || || || | || || || | Sbjct 3816715 ATGCAGATCTTCGTTAAGACCTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGTTCT 3816656 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || |||| ||| ||||| || || ||||| || ||||| || || || || Sbjct 3816655 GATACAATCGACAACGTGAAAGCAAAA-ATTCAGGACAAGGAGGGAATTCCACCAGACCA 3816597 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||||||||||||| || ||| || | | | | |||||||| Sbjct 3816596 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAAGATGGAAGGACCCTTGCTGATTATAA 3816537 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 |||||| ||||| ||||| || ||| Sbjct 3816536 CATTCAGAAGGAGTCGACCCTTCAC 3816512 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || || || || || || || || | || Sbjct 3817842 ATGCAGATCTTTGTAAAAACACTTACCGGAAAGACGATCACCCTTGAGGTGGAGTCTTCC 3817783 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | ||||| || || || |||||||| || || || || Sbjct 3817782 GACACTATTGACAACGTTAAAGC-CAAGATTCAGGATAAGGAAGGAATTCCCCCGGACCA 3817724 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||| || || || || || ||||| ||| | | | ||||| || Sbjct 3817723 GCAACGTCTCATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 3817664 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| | || | || || ||| Sbjct 3817663 TATACAGAAGGAATCTACTCTCCACCTCGTGCTCCGGCTCCGTGGTGGC 3817615 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || ||||| ||||| || || | || Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTCC 3816884 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| ||||| || ||||| || ||||| || || || || || Sbjct 3816883 GATACCATTGACAACGTTAAGGCAAAA-ATTCAAGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| ||||| || |||||||||||| || | | | || || || Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || ||| | || | || || | ||||| Sbjct 3816764 CATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGAGGGGAGG 3816717 >seq7 Length=7328097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| ||||||| ||||||||||| || || || || || || || | | Sbjct 2411483 GATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTC 2411542 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 2411543 TGATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 2411602 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 |||||| | ||||| ||||| ||||| || Sbjct 2411603 GCAACGTCTCATCTTCGCCGGTAAACAACT 2411632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || || ||||| ||||| || ||||| ||||| || | ||||||||||| ||||| ||| Sbjct 2412136 ATTCAGGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAG 2412195 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 || |||||| ||| | | | ||||| |||||||| ||||| || || || ||| | Sbjct 2412196 CTAGAGGATGGGAGGACTCTCGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTT 2412255 Query 24911 GTGTTGCG 24918 || |||| Sbjct 2412256 GTCCTGCG 2412263 >seq39 Length=3648736 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || || ||||| ||||| || ||||| || || || | || || ||||| || || || Sbjct 1061642 ATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAA 1061583 Query 24851 CTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 |||| ||| |||| | | || |||||||||||||||||||||| || || || |||| Sbjct 1061582 TTGGAAGATGGTCGA-ACGCTTG-CAGATTATAACATTCAAAAGGAGTCAACCCTTCACT 1061525 Query 24909 TGGTGTTG 24916 |||| ||| Sbjct 1061524 TGGTTTTG 1061517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449720655273920