Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq32 102 7e-17 seq78 89.7 4e-13 seq1 89.7 4e-13 >seq32 Length=4239389 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || || || ||||| |||||| | ||| |||| Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||| || || || || | || ||| ||| Sbjct 976998 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 976939 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||| ||||| || |||| ||| || | || ||||| ||| Sbjct 976938 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTAGCAGATTATAAC 976879 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| ||||| |||||||| | ||| | || |||| || |||| Sbjct 976878 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGAA 976830 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 ||||||||||| || |||||| | || |||||||| || ||| |||| || ||| || Sbjct 977514 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 977455 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | | || || |||||| || ||||| ||| | || || Sbjct 977454 ---GATACAATTGACAATGTTAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGAC 977398 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || ||||| | ||| ||||| || || ||||| | | |||| | || |||||| Sbjct 977397 CAACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTAC 977338 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| |||||||| | || ||||| | ||||| || || || Sbjct 977337 AATATCCAAAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 977288 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || | || ||||||||||| || | || |||| | Sbjct 977286 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGAGTTCT 977227 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || || || ||||| ||||| | || || ||| Sbjct 977226 GATACCATTGACAATGTCAAGGCTAAAATACAAGACAAGGAAGGTATTCCACCTGACCAA 977167 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||||| ||| ||||| ||||| ||||| | | || | || || ||||| Sbjct 977166 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGACGGGCGGACTCTCGCTGACTACAAT 977107 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| |||| |||| | | || || ||||| Sbjct 977106 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGG 977060 >seq78 Length=1515738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | ||||| ||||| || ||| | || || | Sbjct 1185791 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAAACAATAACCCTTGAGGTTGAAAGTTCT 1185732 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | ||||| || ||| || || ||||| | || || || Sbjct 1185731 GACACTATCGACAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAG 1185672 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||||| || || || || || ||||||| |||| | || ||||||||| Sbjct 1185671 CAAAGGCTTATTTTCGCTGGAAAGCAACTTGAGGATGGTCGAACCCTCGCTGATTACAAC 1185612 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || | ||| |||| Sbjct 1185611 ATACAAAAAGAATCAACCCTTCACTTGGT 1185583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||||||||| || ||||| || || | ||| ||| | Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || |||||| || |||||||| | || || || Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | |||| || ||||| || |||| |||| || || | || || || || Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| ||||| || | ||| ||||||| | || || || |||| Sbjct 1184929 CATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGGAA 1184880 >seq1 Length=8341428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||| | ||||| || || || ||| |||| |||| | | Sbjct 3817614 ATGCAAATTTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 3817555 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| || || ||||| | ||| || || Sbjct 3817554 GATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 3817495 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | || || || ||| ||||||||| |||| | || ||||||||| Sbjct 3817494 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAGGATGGACGAACTCTTGCTGATTACAAC 3817435 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || |||||||| Sbjct 3817434 ATCCAGAAGGAATCTAC 3817418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412683288663752