Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq16 102 5e-17 seq78 95.1 8e-15 seq12137 84.2 1e-11 seq11182 82.4 5e-11 seq39 82.4 5e-11 >seq1 Length=8341428 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||| ||||||| || ||| ||||||||||| ||||| | || | || | Sbjct 3817855 CCTTAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCC 3817914 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || |||||||| ||||||||||||| ||||||||| || | || | ||| ||||| Sbjct 3817915 ATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTT 3817974 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | ||||| |||||| | || | || | ||| || |||| ||| || Sbjct 3817975 ATCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 3818034 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || ||||| ||||| Sbjct 3818035 GGTCTTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||||||||||||| || | ||| | | |||| Sbjct 3816504 AGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCT 3816563 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||| ||||||| | ||||||||| | || | ||||||||||| Sbjct 3816564 TCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 3816623 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| ||| ||| | || | ||| ||| || || | || |||||| Sbjct 3816624 TGAATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTC 3816683 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || ||||||||||| Sbjct 3816684 TTTCCAGTCAAGGTCTTAACGAAGATCTGCAT 3816715 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| | || || ||||||| |||| |||||| |||||||| ||||| | Sbjct 3816715 TTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG 3816774 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | |||| ||||| ||||||||||||||||||| | ||||||||| | | Sbjct 3816775 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 3816834 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | |||||| || ||| | || | || | ||||| Sbjct 3816835 GAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGA 3816894 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| || ||||| || || | ||||| || || |||||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || |||||||| ||||| || || | || | || |||| Sbjct 3817403 AGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCC 3817462 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||| |||| |||||||||| | || | || ||||| || Sbjct 3817463 TCCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCC 3817522 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| || ||| Sbjct 3817523 TGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTC 3817582 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| ||||| || |||||| Sbjct 3817583 TTTCCGGTAAGAGTCTTGACAAAAATTTGCATG 3817615 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || || || | ||| | || | || || ||||||||||| |||||| Sbjct 3817652 TCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 3817711 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | || ||||| || | || || ||| ||| Sbjct 3817712 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTTAACGTTG 3817771 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||| || |||| ||| || |||||||| || || || |||||| Sbjct 3817772 TCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACA 3817831 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 3817832 AAGATCTGCATG 3817843 >seq16 Length=5655878 Score = 102 bits (112), Expect = 5e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| |||||||||||||| ||||| | ||| | || | || Sbjct 2199373 AGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCC 2199314 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||| |||| || |||||||| | || | || |||||||| Sbjct 2199313 TCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 2199254 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||||| || | ||||| || | ||| || || | || || Sbjct 2199253 TGGATCTTTGCCTTGAC--AT--TGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGAT 2199198 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| ||||| ||||| || || |||||||||||| Sbjct 2199197 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 2199161 >seq78 Length=1515738 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| |||||| |||||||| || || | | | || |||| Sbjct 1184669 AGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCC 1184728 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| ||||| ||||| || |||| ||||||||| | || | ||||||||||| Sbjct 1184729 TCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCC 1184788 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || | ||| || || | || || ||| Sbjct 1184789 TGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATTGTC 1184848 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| ||||| || ||||| Sbjct 1184849 TTTCCTGTCAAGGTCTTCACAAATATTTGCAT 1184880 >seq12137 Length=235 Score = 84.2 bits (92), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || |||||||| |||||||||| | ||||||||| | || | |||||||| Sbjct 235 ATCTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTT 176 Query 34882 -GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 ||| | || || || ||| | || | ||| | ||| || |||| ||| | Sbjct 175 TGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGA 116 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||||| || |||||||| || || ||||||||| Sbjct 115 TGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCATG 78 >seq11182 Length=218 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 8/151 (5%) Strand=Plus/Minus Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 |||||| || || ||||| |||| ||| |||||| | || | ||||||||||| | || Sbjct 215 TTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGAT 156 Query 34891 TTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||| ||||| | ||||||| ||| || ||||| || | ||| ||||| | Sbjct 155 CTTTGCCTTGAC----GTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTT 100 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| |||||||| || || || ||||| Sbjct 99 TACCCGTCAGGGTCTTAACGAAAATTTGCAT 69 >seq39 Length=3648736 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| | |||||||| | ||||| |||| ||||| ||| |||||| |||||||| Sbjct 1061493 AATCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 1061552 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||| || | || | || |||| |||| |||||| || || || || | || ||||| Sbjct 1061553 ATAATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTG 1061612 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | || |||||||| Sbjct 1061613 GTCAGGAGGAATACCTTCCTTGTC 1061636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325567907396216