Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq32 105 5e-18 seq78 95.1 1e-14 seq1 93.3 3e-14 seq16 86.0 5e-12 >seq32 Length=4239389 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| ||||| || || || ||||| |||||| | ||| |||| ||| Sbjct 977058 ATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 976999 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| || || | || ||| || Sbjct 976998 -GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCA 976940 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| | |||| ||| ||||| ||||| || || | || || | || || || || Sbjct 976939 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTAGCAGATTATAA 976880 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||| || |||||||| | ||| | ||||||| || |||| Sbjct 976879 CATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGAA 976830 >seq78 Length=1515738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/247 (69%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||||||||| || ||||| || || | ||| ||| | Sbjct 1185108 AATGCAAATTTTTGTGAAAACTTTAACGGG-AAAACAATCACTTTGGAAGTTGAGAGTTC 1185050 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || |||||| ||||||||||| | || || || Sbjct 1185049 AGATACAATTGATAATGTTAAGGCTAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 1184990 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| || ||||| || |||| || | | || | || ||||| || Sbjct 1184989 ACAGAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGGACTCTAGCCGACTATAA 1184930 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 |||||||||||| || || | ||| |||||||| | | || || || ||| ||| Sbjct 1184929 CATTCAAAAGGAATCAACTCTCCACTTGGTGTTGCGTCTTCGTGGAGG----AATGCAAA 1184874 Query 107795 TATTTGT 107801 ||||||| Sbjct 1184873 TATTTGT 1184867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || ||||| | || || |||||||| ||| | || ||| ||| Sbjct 1185564 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 1185505 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | || || ||||| |||||||| || | ||| || | Sbjct 1185504 T-GATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATTCCCCCTGACC 1185446 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || |||| || |||||||| || || || | | || |||||||||||| Sbjct 1185445 AACAGAGGCTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACA 1185386 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | ||||||||||| || || ||||| ||||| Sbjct 1185385 ATATTCAAAAGGAATCCACTTTGCATTTGGTG 1185354 >seq1 Length=8341428 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || || |||||| |||| ||| ||| Sbjct 3816943 ATGCAGATATTCGTCAAGACTTTGACTGGGAAGACAATTACCCTCGAGGTCGAGAGCTC- 3816885 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || ||| ||| ||||| |||||| | ||| || || Sbjct 3816884 CGATACCATTGACAACGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 3816825 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||||||||| | | || | || |||||||| Sbjct 3816824 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 3816765 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||||||| || Sbjct 3816764 CATTCAAAAGGAGTCCAC 3816747 >seq16 Length=5655878 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || ||||| |||| || || ||||| || ||||| ||| ||| Sbjct 2199162 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTTGAGAGCTC- 2199220 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || |||||| || || ||||| | ||| ||| || Sbjct 2199221 CGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCA 2199280 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| || || || ||||| ||||||| | ||| | || |||||||| Sbjct 2199281 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACTCTAGCCGACTACAA 2199340 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||| || || | ||| | ||| Sbjct 2199341 CATTCAGAAGGAATCGACCCTCCACCTTGTG 2199371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398723843710696