Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq78 145 6e-30 seq32 136 3e-27 seq1 129 5e-25 seq39 104 2e-17 seq7 82.4 6e-11 >seq78 Length=1515738 Score = 145 bits (160), Expect = 6e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || ||||| ||||| || ||||||||||| ||||| ||||| || | ||| ||| Sbjct 1185574 AAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGA 1185633 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || ||||| || ||||| | || | |||||||| || || || || || || Sbjct 1185634 CCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCC 1185693 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || ||||| |||||| | || ||| | || | |||||||||| ||| || ||||| || Sbjct 1185694 TTATCTTG-AATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGT 1185752 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || || | ||||| ||||| || ||||| Sbjct 1185753 TATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 138 bits (152), Expect = 9e-28 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||||| |||||||| ||||||||||| ||||| || | || || Sbjct 1185120 ACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCC 1185179 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| ||| | ||||| || ||||| ||||| |||| ||||| || Sbjct 1185180 ATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTT 1185239 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| | || | |||||||| ||| || || | || | Sbjct 1185240 GTCTTG-AATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAA 1185298 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || | ||||| || || || |||||| Sbjct 1185299 TAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 Score = 120 bits (132), Expect = 2e-22 Identities = 167/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||| |||||| || || || ||||| |||||||||||||| || || Sbjct 1184881 TCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGC 1184940 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | | ||| || | ||| || ||||| | |||||||| || || || || || Sbjct 1184941 TAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGG 1185000 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||| ||||| ||| || | || ||| | || | || || ||| || | Sbjct 1185001 GATCCCTTCTTTATCTTG-AATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAA 1185059 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || ||||| || ||||| ||||| ||||| || |||||| Sbjct 1185060 CTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | |||||||| |||||||| || || ||||| | || || Sbjct 1185348 ACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCC 1185407 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | || || || || || |||||||||||||| Sbjct 1185408 ATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTT 1185467 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || ||| | || | || ||||| ||| || || | || || Sbjct 1185468 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGAT 1185527 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| ||||| | |||||| || || || |||||| Sbjct 1185528 GGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 1185564 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || ||||||||||| ||||| || | || || Sbjct 1184665 ACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCC 1184724 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | || | ||||||||| || || || |||||||| || Sbjct 1184725 ATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTT 1184784 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || | || | ||||| || || || || | || || Sbjct 1184785 GTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGAT 1184844 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || ||||| || |||||||| |||||| Sbjct 1184845 TGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 >seq32 Length=4239389 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || ||||| ||||| | ||| ||||| ||||||||||||||||| || Sbjct 976831 TCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGC 976890 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || || || |||||| | ||||| || || || ||||| || Sbjct 976891 TAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 976950 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||| || ||||| | || ||| ||| | || | || ||||| || || Sbjct 976951 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 977010 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || ||||| || ||||| || || || || | || || Sbjct 977071 ACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCC 977130 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || |||||| | || | ||| || || || || |||||||| || || Sbjct 977131 GTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTT 977190 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||||| ||| |||||| | || | || |||||| || || |||||||| || Sbjct 977191 GTCTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGAT 977250 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | ||| || |||||||| ||||| Sbjct 977251 GGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || || ||||| ||||| || || ||||| |||| || || || Sbjct 977303 AGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCC 977362 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | || | || || || || || ||||| |||||||| ||| Sbjct 977363 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 977422 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| || ||| | || | || ||||| ||| || || || || || || Sbjct 977423 TG-AATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGT 977481 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | ||||| || ||||| ||||| Sbjct 977482 TTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| ||||| || || || ||||| || | || ||| ||| || | ||| Sbjct 976628 TGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGC 976687 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | |||| ||| || ||||| || ||||| |||||||||||||| ||| || Sbjct 976688 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTG-AATCTT 976746 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | ||||| ||| ||| ||||| | || || || || || || Sbjct 976747 CGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGT 976806 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || ||||||||| Sbjct 976807 TAACGTCTTCACGAAAATCTGCATT 976831 >seq1 Length=8341428 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || |||||||||||||| |||| ||| | Sbjct 3816500 ACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCC 3816559 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || ||| | ||||| || ||||| || || ||||| ||||| || Sbjct 3816560 ATCTTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTT 3816619 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||||| ||| || | || | || |||||| || || || | ||| | Sbjct 3816620 GTCCTG-AATTTTTGCTTTCACGTTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGA 3816678 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| ||||| ||||| || ||||||||| Sbjct 3816679 TGGTCTTTCCAGTCAAGGTCTTAACGAAGATCTGCATT 3816716 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || || ||||| |||||||| || || |||| || || ||| || ||||| Sbjct 3817868 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGC 3817927 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | ||||||| |||||||||||| ||||| || || || || || | ||| Sbjct 3817928 TTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTG 3817987 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | ||||| ||| || || ||||| || || || ||||| || Sbjct 3817988 GCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTA 3818047 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| ||||| || || ||||| Sbjct 3818048 AGGGTCTTAACGAAGATTTGCAT 3818070 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| ||| || || | ||||| ||||| || ||||||||||| || || || Sbjct 3816716 TCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGC 3816775 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || || || || || || | ||||| || ||||| || || || Sbjct 3816776 AAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 3816835 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || || ||||| |||||||| || || | || | || || || || | Sbjct 3816836 AATGCCTTCCTTATCTTG-AATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGA 3816894 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| || || || || ||||||||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 >seq39 Length=3648736 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | || ||||| ||||| || || || ||||||||||||||||| ||| Sbjct 1061503 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCA 1061562 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | ||| || |||||| | || ||||| ||||| || || ||| Sbjct 1061563 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 1061622 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| || ||||| || Sbjct 1061623 ATACCTTCCTTGTCCTG 1061639 >seq7 Length=7328097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | ||||| ||||| || || |||||||| ||||| || | || | Sbjct 2412264 ACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCC 2412205 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| || ||||||||||| || || || || || Sbjct 2412204 ATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTT 2412145 Query 29691 GTCTTGTAATTT 29702 ||| || ||||| Sbjct 2412144 GTCCTG-AATTT 2412134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385071480956424