Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq32 165 2e-35 seq78 163 6e-35 seq1 158 2e-33 seq16 120 6e-22 seq11182 104 5e-17 seq7 93.3 8e-14 >seq32 Length=4239389 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || |||||||| ||||| ||||||| | | | ||| Sbjct 976616 CGGAGGACAAGGTGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCA 976675 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | ||| |||||||||||||| ||||| |||||||||||||| || || || || Sbjct 976676 TCCTCCAATTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTG 976735 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || ||||| || || || || | ||| |||||||| || || Sbjct 976736 TCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCGACTTCCAATGTGATT 976795 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| |||||||| || || ||||||||| Sbjct 976796 GTCTTCCCTGTTAACGTCTTCACGAAAATCTGCATT 976831 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || |||||||||||||| ||||| ||||| || |||| Sbjct 977058 TACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAG 977117 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || || |||||||| || ||||| ||||| || || | Sbjct 977118 CGAGAGTCCGCCCGTCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTG 977177 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || || || || ||||| ||||| |||||| | || | Sbjct 977178 GAATACCTTCCTTGTCTTGTATTTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCA 977237 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||| || | ||||| |||||||| ||||| Sbjct 977238 CCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 977286 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || || ||||| |||| || ||||| || || || |||||||| | | Sbjct 976832 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCT 976891 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || || ||||| || || || |||||||| || | || ||||| || || || Sbjct 976892 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 976951 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||||||||| ||||| ||||| ||||| ||||| |||||| || | || || Sbjct 976952 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCA-GAGCTCTCCAC 977010 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || || || ||||| || || ||||| || ||||| Sbjct 977011 TTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || |||||||| || || ||||| ||||| | || ||| ||||| Sbjct 977303 AGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCC 977362 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || ||||||||||| || || ||||| || || || || || || |||||| Sbjct 977363 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 977422 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 ||||||||||| || ||||| ||||| |||||| ||| || || | || || || Sbjct 977423 TGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTT 977482 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | || ||||| ||||| ||||| Sbjct 977483 TTGCCAGTGAGAGTTTTTACGAATATTTGCAT 977514 >seq78 Length=1515738 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| ||||| ||||| || || |||||||| ||||| || ||||||| || ||| | Sbjct 1185574 AAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGA 1185633 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||| |||||||| || || || ||||| || |||||||| ||||||||| Sbjct 1185634 CCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCC 1185693 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||||||||| || || |||||||| || || || ||| | ||| || || | ||| Sbjct 1185694 TTATCTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTT 1185753 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || | || || ||||| || ||||| Sbjct 1185754 ATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 156 bits (172), Expect = 8e-33 Identities = 172/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || ||||| ||||| ||||| || || || ||||| || | | Sbjct 1184882 CCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGCT 1184941 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | ||||| ||||| | ||| || ||||| || || | ||| ||||| ||||| || Sbjct 1184942 AGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTGGG 1185001 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||||||||| || || ||||| ||||| ||||| | || ||| Sbjct 1185002 ATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAACT 1185061 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || || || || || || || ||||| || |||||| Sbjct 1185062 TCCAAAGTGATTGT-TTTCCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || || || || || ||||| | Sbjct 1184652 TACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGG 1184711 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | || || || | |||||||||||| || || |||||||| || || |||| Sbjct 1184712 CCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAAAATGAGTCTTTGCTGGTCAGGAG 1184771 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || || || || || || || ||||| || || | || | || Sbjct 1184772 GGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTC-TGAGCTCTCA 1184830 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || ||||| |||||||| ||||| |||||||| |||||| Sbjct 1184831 ACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 1184881 Score = 104 bits (114), Expect = 5e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| ||||| || || || || ||||| | ||| | | || Sbjct 1185120 ACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCC 1185179 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || |||||||| | || || || || || || | ||| ||||| Sbjct 1185180 ATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTT 1185239 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| || || || ||| ||| || || || || || Sbjct 1185240 GTCTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAACCTCTAATGTAAT 1185299 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | || || || || || |||||| Sbjct 1185300 AGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 >seq1 Length=8341428 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||||||||| ||||||||||| ||||| | || ||| ||| Sbjct 3817628 CGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCG 3817687 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||| ||||| || | ||| || || || || |||||||||||| Sbjct 3817688 TCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTA 3817747 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| || || ||||| || || || || || || | || ||| Sbjct 3817748 TCCTGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATC 3817807 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || |||||||| |||||||| Sbjct 3817808 GTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||| ||||| | ||| || || || || || || || || || |||| Sbjct 3816717 CCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCA 3816776 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || || || || || || ||||| || ||||| | || || || ||||| || Sbjct 3816777 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 3816836 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || ||||||||||||||||| ||||| || || || ||||| ||||| || | || || Sbjct 3816837 ATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATC-GGAGCTCTCGAC 3816895 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 3816896 CTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||||||||| ||||| || || ||||||| ||| ||| || || || | || Sbjct 3817412 TGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGTCCATCCTCCAACTGC 3817471 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||| |||||||| || ||||| || || ||||||||||| || ||||| Sbjct 3817472 TTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTG 3817531 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || ||||| ||||| | || || || | || || ||||| || || Sbjct 3817532 GCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTA 3817591 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| || ||||| Sbjct 3817592 AGAGTCTTGACAAAAATTTGCAT 3817614 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| ||||| || |||||||| || || || || | ||| ||| || || Sbjct 3817859 AGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCC 3817918 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || || || ||||| | || ||| ||||| || || || ||||||||||| Sbjct 3817919 TCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCC 3817978 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || || || || || || || || || || || || || | || || ||| Sbjct 3817979 TGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 3818038 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| | ||||| || || || ||||| Sbjct 3818039 TTGCCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 >seq16 Length=5655878 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || || | ||| || || ||||| ||||| || || || || | | Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| ||||| || || || ||||| || || || | | || || || || || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||||||||| || || |||||||| || ||||| || || ||||| || | || || Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATC-GGAGCTCTCAAC 2199210 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||| || ||||| || || | || || || || |||||||| Sbjct 2199209 TTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq11182 Length=218 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 || ||| || ||||||||||| ||||||||||| ||||| || ||||| ||||| || || Sbjct 218 TAATTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTG 159 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 |||||||| || || || || || |||||| | ||| || || | || || || || Sbjct 158 GATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTT 99 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||||| || || || ||||| Sbjct 98 ACCCGTCAGGGTCTTAACGAAAATTTGCAT 69 >seq7 Length=7328097 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || || || ||||| || || ||||||| ||| | || || Sbjct 2412264 ACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCC 2412205 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || ||||| || || ||||||||||| | || || ||||| ||||| || |||||||| Sbjct 2412204 ATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTT 2412145 Query 82715 ATCTTGAAT 82723 || ||||| Sbjct 2412144 GTCCTGAAT 2412136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981431393546296