Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq16 125 7e-24 seq1 116 4e-21 seq32 109 5e-19 seq12137 95.1 1e-14 >seq16 Length=5655878 Score = 125 bits (138), Expect = 7e-24 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| || || ||||| || ||||| ||| | | || || || |||||||||||||| Sbjct 2199359 GGTCGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCG--TCCTCGAGCTGCTTT 2199302 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| | ||||||||||| || ||||| ||||||||||| ||||||| | Sbjct 2199301 CCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCC 2199242 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | || |||| | ||| || |||| |||| ||| || || || || Sbjct 2199241 TTGACATTGTCGATGGTATCGGAGCTCTCAACTTCGAGAGTGATGGTCTTACCCGTTAGG 2199182 Query 133641 GTTTTTACGAAAATCTGCATGG 133662 ||||| ||||| |||||||||| Sbjct 2199181 GTTTTCACGAAGATCTGCATGG 2199160 >seq1 Length=8341428 Score = 116 bits (128), Expect = 4e-21 Identities = 149/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || |||||||||||||||||| | | || || | |||||| || ||||| | Sbjct 3817646 GTAGATTCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCC--GTCCTCAAGTTGCTTTC 3817703 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || |||||||| || || || |||||||| || ||| || ||| Sbjct 3817704 CAGCGAAGATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATC-CTGAATCTTGGCT 3817762 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | |||| ||||||| | |||||| || | ||||| || || ||||| || Sbjct 3817763 TTAACGTTGTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGT 3817822 Query 133641 GTTTTTACGAAAATCTGCATG 133661 |||||||| || ||||||||| Sbjct 3817823 GTTTTTACAAAGATCTGCATG 3817843 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| | | | | | | | ||||| || |||||||| Sbjct 3817874 GTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCA-TCCTCAAGTTGCTTGCC 3817932 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||| || || || || |||||||| || ||| || ||| Sbjct 3817933 GGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGGATTTTGGCCTT 3817992 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| ||| ||||| || || || Sbjct 3817993 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTAAGGGT 3818052 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 3818053 CTTAACGAAGATTTGCAT 3818070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| || || || ||||| || | | || ||||| |||||||| || Sbjct 3816746 GGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCC 3816805 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || | || ||||||||| || || ||||||||||| || ||| ||||| || Sbjct 3816806 GGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC-TTGAATTTTTGCCT 3816864 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || |||| | ||| || |||| ||| | || || || |||| || Sbjct 3816865 TAACGTTGTCAATGGTATCGGAGCTCTCGACCTCGAGGGTAATTGTCTTCCCAGTCAAAG 3816924 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 3816925 TCTTGACGAATATCTGCAT 3816943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/208 (71%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || |||||||| | | || | | | || || | || Sbjct 3816968 ATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCA-TCTTCCAACT 3817026 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGA-TGCCTTCCTTGTCGGTGATC 133574 | || || ||| | || || | ||||||||| || |||| ||||||||||||| ||| Sbjct 3817027 GTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGGAATGCCTTCCTTGTCCTGAATC 3817086 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| | | ||| || || | ||||| ||| || ||| Sbjct 3817087 TTAGCCTTCACGTTGTCAATTGTGTCAGAAGACTCAACCTCCAAGGTGATGGTCTTCCCG 3817146 Query 133635 GTCAGAGTTTTT-AC-GAAAATCTGCAT 133660 || ||||||||| || ||||| ||||| Sbjct 3817147 GTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq32 Length=4239389 Score = 109 bits (120), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | || || || || || |||||||||||| | | ||| || | |||||| | Sbjct 977309 AAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCC--GTCCTCAA 977366 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | || |||| ||| |||||||| || ||||| || || || | Sbjct 977367 GTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAA 977426 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | |||| || || | | ||||| |||| ||||| ||||||| Sbjct 977427 TCTTTGCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGC 977486 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| || ||||| Sbjct 977487 CAGTGAGAGTTTTTACGAATATTTGCAT 977514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || ||||| |||||||| || | | || | |||||||||| Sbjct 977081 AAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTCCGCCCGTCCTCGAGC 977140 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| || | ||| ||||| || || || ||||||||||| || Sbjct 977141 TGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGTATT 977200 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| || || | |||||| || | |||| ||||||||| Sbjct 977201 TTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTTTTGCCA 977260 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || ||||| Sbjct 977261 GTAAGGGTCTTCACAAATATTTGCAT 977286 >seq12137 Length=235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT- 133564 || || |||||||| || ||| | || | || ||||||||| || ||||| || ||||| Sbjct 234 TCTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTT 175 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | |||| ||||| | | ||| || || | ||||| Sbjct 174 GTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGAT 115 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || |||||||| || || ||||||||||||||| Sbjct 114 GGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCATG 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483230670599360