Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq32 102 5e-17 seq1 96.9 2e-15 seq16 93.3 3e-14 seq78 84.2 1e-11 >seq32 Length=4239389 Score = 102 bits (112), Expect = 5e-17 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || || |||||||| | | ||| || | || |||||||| Sbjct 976628 TGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGC 976687 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| |||| | ||| |||||| | || | || |||||||| ||| ||| Sbjct 976688 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 976747 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACC 33722 |||| ||| ||| | |||||| ||| ||| || || | ||||| || || || Sbjct 976748 GCCTTCA-CATTGTCGATGGTGTC---TGAACTTTCGACTTCCAATGTGATTGTCTTCCC 976803 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||| || || || |||||||| Sbjct 976804 TGTTAACGTCTTCACGAAAATCTGCAT 976830 >seq1 Length=8341428 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || ||||| |||||||||| || || || |||| || | ||| ||||| || || Sbjct 3817652 TCCTTCTGTATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 3817711 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||| ||||| || | || | ||||| || || ||| || ||| ||| | Sbjct 3817712 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGAATCTTGGCTTT-AACGTT 3817770 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| |||||| || ||||| |||| |||||||| || || || | |||||||| Sbjct 3817771 GTCAATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTAC 3817830 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 3817831 AAAGATCTGCAT 3817842 >seq16 Length=5655878 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||| | || || || || || || |||||||| |||| Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| ||||||||||||||||| || | || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| ||| | ||| ||| || || Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTGTCGATGGTATCGGAGCTCTCAAC 2199210 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || | ||||| || ||||| |||| ||||| || ||||||||||| |||| Sbjct 2199209 TTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTTG 2199157 >seq78 Length=1515738 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | ||||| || || || |||||||||||||||||||| | | Sbjct 1185565 CCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCG 1185624 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| ||||| || ||||| | | ||||| ||| | || Sbjct 1185625 AGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGG 1185684 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | | |||| ||| | ||||| ||| || Sbjct 1185685 ATTCCTTCCTTATCTTGAATTTT-GGCCTTTACATTGTCGATAGTGTCAGAACTTTCAAC 1185743 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 1185744 CTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 1185791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328577952698880