Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq32 122 8e-23 seq16 113 4e-20 seq78 111 1e-19 seq1 107 2e-18 seq39 89.7 5e-13 seq7 86.0 6e-12 >seq32 Length=4239389 Score = 122 bits (134), Expect = 8e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || || | | ||| ||||| ||||| |||||||||||||| ||||| | Sbjct 976830 TTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTG 976889 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | || | | || || ||||||||||| ||||| ||||||| ||| ||||||| | Sbjct 976890 CTAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTG 976949 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| | |||||| || |||||| |||| | | | | || || |||| | Sbjct 976950 GAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTC---T 977006 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||| || || ||||| || ||||| ||||||||||| || ||||| Sbjct 977007 CCACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || | ||||||||| | ||| |||||||| || ||||||||||| Sbjct 977288 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCA 977347 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || |||||||| ||||| || | || ||| ||||| | ||| Sbjct 977348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 977407 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||| || || |||||| ||| | | | | | || || ||| |||| Sbjct 977408 ATGCCCTCTTTATCTTGAATCTTTGCCTTAACATTGTCAATTGTATCAGAGCT---TTCC 977464 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | ||||| ||||| || || | |||||| || ||||| |||| ||||| Sbjct 977465 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCA-TCTGT 977518 >seq16 Length=5655878 Score = 113 bits (124), Expect = 4e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| ||||| | ||||| |||| || |||||||| || || || Sbjct 2199352 TCCTTCTGAATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAA 2199293 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||||| || | | ||||||||| ||||||| ||| | | | Sbjct 2199292 ATCAAACGCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTG 2199233 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | || || |||| || || || | ||||| || |||||||| | |||||| Sbjct 2199232 TCGATGGTATCGGAGCTC---TCAACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTC 2199176 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 2199175 ACGAAGATCTGCAT 2199162 >seq78 Length=1515738 Score = 111 bits (122), Expect = 1e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||||||||| | || || | || || |||||||| || ||||| Sbjct 1185145 TCCTTTTGAATGTTGTAATCGGCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAG 1185204 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||||| ||||| | ||||||||| ||||| || | | | Sbjct 1185205 ATCAACCTCTGCTGGTCCGGGGGAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTA 1185264 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| ||| ||||| | || || ||||| ||||| | ||||| Sbjct 1185265 TCGATTGTGTCAGAGCT---TTCAACCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTG 1185321 Query 35723 ACAAATATCTGCATTC 35738 || || || ||||||| Sbjct 1185322 ACGAAAATTTGCATTC 1185337 Score = 107 bits (118), Expect = 2e-18 Identities = 145/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||||||||| || || | || |||| || || || || || Sbjct 1184689 CTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAATTGTTTTCCAGCGAA 1184748 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | |||||||| | ||| | | |||||||||| ||| ||| || | | || Sbjct 1184749 AATGAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGT 1184807 Query 35665 T-GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||||| |||| || ||||||| ||||| || || || ||||| || | Sbjct 1184808 TATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATTGTCTTTCCTGTCAAGGTCT 1184864 Query 35721 TCACAAATATCTGCATTC 35738 |||||||||| ||||||| Sbjct 1184865 TCACAAATATTTGCATTC 1184882 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||||||| || || ||||||||||| ||||| || | Sbjct 1185335 TTCCACCACGAAGACGAAGCACCAAATGCAAAGTGGATTCCTTTTGAATATTGTAGTCCG 1185394 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||| || || | || || || || ||||| || || || | || ||| ||||| | | Sbjct 1185395 CCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGCCTCTGTTGGTCAGGGG 1185454 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| | ||| || || |||||| ||||| | | | | || || ||| || Sbjct 1185455 GAATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---TT 1185511 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| | ||||| |||||||| || | |||||||| || || ||||||| Sbjct 1185512 CCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATTC 1185565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||||||||| | | ||||| || | || || ||||| ||||||||||| | Sbjct 1185563 TTCCACCACGTAAACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAG 1185622 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | |||||| | || || || ||||| || || || || | || |||||||| | || Sbjct 1185623 CGAGGGTTCGACCATCCTCAAGTTGCTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAG 1185682 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||||| | | ||| ||| | ||| | | | | | ||||| ||| Sbjct 1185683 GGATTCCTTCCTTAT-CTTGAATTTTGGCCTTTACATTGTCGATAGTGTCAGAACTTTCA 1185741 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | || || ||||| || || | |||||||||||| || |||| ||||| Sbjct 1185742 ACCTCAAGGGTTATTGTTTTTCCGGTGAGAGTTTTCACAAAGATTTGCA-TCTGT 1185795 >seq1 Length=8341428 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || | ||| | || | ||| ||||| || || ||||||||||| Sbjct 3817616 CCACCACGGAGCCGGAGCACGAGGTGGAGAGTAGATTCCTTCTGTATATTGTAATCGGCA 3817675 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || || ||||| || || || || | || |||||||||| ||| Sbjct 3817676 AGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 3817735 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| || |||| | |||| | | |||||| || ||||| Sbjct 3817736 ATTCCTTCCTTATCC-TGAATCTTGGCTTTAACGTTGTCAATAGTGTCGGAAGACTCCAC 3817794 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || || | ||||| ||||| |||||||| Sbjct 3817795 CTCAAGGGTGATCGTCTTTCCGGTAAGTGTTTTTACAAAGATCTGCAT 3817842 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || || | || | | || ||||||||||| || || || Sbjct 3816752 CTCCTTTTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAA 3816811 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | |||| || ||||| | | ||| |||||| | | || Sbjct 3816812 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTAT-CTTGAATTTTTGCCTTAACGT 3816870 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | || || |||| || ||||| | || || || || || |||||||| | Sbjct 3816871 TGTCAATGGTATCGGAGCTC---TCGACCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCT 3816927 Query 35721 TCACAAATATCTGCAT 35736 | || ||||||||||| Sbjct 3816928 TGACGAATATCTGCAT 3816943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | ||| | || |||||| || ||||||||||| || Sbjct 3816945 CCACCACGGAGACGCAACACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCTGCA 3817004 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC-CGAAGG 35628 | ||||| | || |||| ||| || || || || || | | ||||||||| | || Sbjct 3817005 AGAGTTCGGCCATCTTCCAACTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGGGGG 3817064 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 || || ||||||||| ||||| ||||| |||| | | ||||| || || | Sbjct 3817065 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCA-CGTTGTCAATTGTGTCAGAAGACTCAA 3817123 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAG-TTTTCAC-AAATATCTGCAT 35736 |||||| ||||| || || || || | || |||| || ||| || ||||| Sbjct 3817124 CCTCCAAGGTGATGGTCTTCCCGGTGAGAGTTTTTGACAAAAAATTTGCAT 3817174 >seq39 Length=3648736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 |||||| ||||| || | || ||||||||||||||| ||||| || | ||||| | Sbjct 1061514 CCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCGACC 1061573 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || |||| |||||||| ||||| || || | ||||||||| | ||||| | ||||| Sbjct 1061574 ATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTT 1061633 Query 35641 GTCC 35644 |||| Sbjct 1061634 GTCC 1061637 >seq7 Length=7328097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | || | | | || || |||||||| || ||||| Sbjct 2412240 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAA 2412181 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||||||| |||||| |||| ||| | || ||||||||| Sbjct 2412180 GATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 2412141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450616302877120