Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq16 158 1e-33 seq78 140 3e-28 seq1 129 6e-25 seq32 114 1e-20 seq7 91.5 1e-13 >seq16 Length=5655878 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| || | ||| ||||| || || |||||||| ||||||||||||||| | Sbjct 2199388 CCTCCTCTGAGACGAAGCACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCT 2199329 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || ||||||||||||||||| || || || Sbjct 2199328 AGAGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 2199269 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || ||| ||||| ||| | || ||||| || || Sbjct 2199268 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACT 2199209 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| |||| ||||| ||||| || ||||| Sbjct 2199208 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2199162 >seq78 Length=1515738 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| ||||| || ||||||||||||||||||||||| ||| Sbjct 1185107 TTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCGG 1185166 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || | || |||||||| ||||||||||| ||||| | |||||| || || | Sbjct 1185167 CTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGGG 1185226 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | | || || || |||||||| || |||||| || | |||||| || ||| | Sbjct 1185227 GAACTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATTGTGTCAGAGCTTTCAA 1185286 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||||| ||||| || || | ||||| ||||||||||||||| Sbjct 1185287 CCTCTAATGTAATAGTTTTCCCCGTAAGTGTTTTGACGAAAATTTGCATT 1185336 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || |||||||| | ||| || || ||||||||||||||||| |||||| Sbjct 1184880 TTCCTCCACGAAGACGCAACACCAAGTGGAGAGTTGATTCCTTTTGAATGTTATAGTCGG 1184939 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || | || || | || || || || |||||||| | ||| || || || | Sbjct 1184940 CTAGAGTCCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTCTGTTGGTCTGGTG 1184999 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || || || || | ||| || || || | Sbjct 1185000 GGATCCCTTCTTTATCTTGAATCTTAGCCTTAACATTATCAATTGTATCTGAACTCTCAA 1185059 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||| || ||||| || ||||||||||| || |||||||||||| Sbjct 1185060 CTTCCAAAGTGATTGTTTT-CCCGTTAAAGTTTTCACAAAAATTTGCATT 1185108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| ||||| |||||||| || | | ||| || || || || || Sbjct 1185588 GTGAAGGGTTGATTCTTTTTGTATGTTGTAATCAGCGAGGGTTCGACCATCCTCAAGTTG 1185647 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||| | | ||||| || || || || ||||| || ||||||||||| Sbjct 1185648 CTTTCCAGCGAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTT 1185707 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | ||||| || ||| || || || || || ||||| ||||| Sbjct 1185708 GGCCTTTACATTGTCGATAGTGTCAGAACTTTCAACCTCAAGGGTTATTGTTTTTCCGGT 1185767 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||| || || |||||||| Sbjct 1185768 GAGAGTTTTCACAAAGATTTGCAT 1185791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||||||||||||||| |||||||| ||||| | | | || || || ||||| || Sbjct 1185367 GTGGATTCCTTTTGAATATTGTAGTCCGCCAAAGTCCGGCCA-TCTTCAAGTTGTTTACC 1185425 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || ||||| | | ||| || || || || || || ||||| ||||| || || || Sbjct 1185426 AGCGAAAATTAGCCTCTGTTGGTCAGGGGGAATACCCTCTTTATCTTGGATCTTAGCCTT 1185485 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | || || || |||||| || | || ||||||||||| || | || Sbjct 1185486 CACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATGGTTTTACCAGTGAGGGT 1185545 Query 134696 TTTAACGAAAATTTGCATT 134714 ||| ||||| ||||||||| Sbjct 1185546 TTTCACGAAGATTTGCATT 1185564 >seq1 Length=8341428 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| || || || | || ||||| || ||||| |||||||||||||||||||| Sbjct 3816715 TTCCTCCCCTCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAG 3816774 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| || || || ||||| || || || || ||||| | |||||| || || | Sbjct 3816775 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 3816834 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || |||||||||||| || || ||| | || ||||| || | Sbjct 3816835 GAATGCCTTCCTTATCTTGAATTTTTGCCTTAACGTTGTCAATGGTATCGGAGCTCTCGA 3816894 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 3816895 CCTCGAGGGTAATTGTCTTCCCAGTCAAAGTCTTGACGAATATCTGCAT 3816943 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || || || ||||||||||||||| ||| || | || || Sbjct 3817862 ACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCA 3817921 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || || ||||| || |||||||| || || || ||||| || || || Sbjct 3817922 AGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGGGGAATCCCTTCCTTATCCTGG 3817981 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| ||| | |||||||| || ||||| || || || ||||| || Sbjct 3817982 ATTTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTG 3818041 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||| |||||||| Sbjct 3818042 CCTGTAAGGGTCTTAACGAAGATTTGCAT 3818070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134495 GAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTG 134554 |||||| | || || || || || |||||||| || |||||||| || ||| || | Sbjct 3817396 GAGTCGGAGGACAAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCAAGAGTTCG 3817455 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | ||| || || || || || | | ||||| || || || || ||||| Sbjct 3817456 TCCATCCTCCAACTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCTTC 3817515 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | || ||||| || ||||| ||||| || Sbjct 3817516 CTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGT 3817575 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || || ||||||||||| Sbjct 3817576 GATAGTCTTTCCGGTAAGAGTCTTGACAAAAATTTGCAT 3817614 >seq32 Length=4239389 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| || ||||| ||| ||| || | ||| || || || Sbjct 977312 TGGAGTGTAGATTCCTTTTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGC 977371 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | | ||| || ||||| || ||||| ||||| |||||||| ||| Sbjct 977372 TTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAATCTTT 977431 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | ||| || || |||||| ||||| || || ||||| || || Sbjct 977432 GCCTTAACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTG 977491 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||| ||||| |||||||| Sbjct 977492 AGAGTTTTTACGAATATTTGCAT 977514 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | | ||| | ||| | || | ||| ||||||||||||||||| || || Sbjct 976830 TTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTG 976889 Query 134545 CAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | || || | || || ||||| || || ||||||||||| | ||| || || || Sbjct 976890 CTAGAGTCCTGCCA-TCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGT 976948 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || ||||| || || ||| || || | ||| || || ||| Sbjct 976949 GGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCC 977008 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| ||||| || || || ||||| || ||||||||||| Sbjct 977009 ACTTCCAAGGTAATTGTTTTCCCAGTCAAGGTTTTCACAAAAATTTGCAT 977058 >seq7 Length=7328097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||| ||||| || || || || | ||| |||||||| || || || ||||| || || || Sbjct 2411633 GAGTTGTTTACCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTG 2411574 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| ||| | || || ||||| || || || || || || || || Sbjct 2411573 GATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTT 2411514 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||||||||| |||||||| Sbjct 2411513 ACCGGTTAGGGTTTTAACGAAGATTTGCAT 2411484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| |||| || ||||| || ||||| ||||| ||||||||||| || | Sbjct 2412276 TCCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 2412217 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || || ||||| || || ||||| ||||| | ||||||||| || || Sbjct 2412216 GAGAGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGAGG 2412157 Query 134606 TATGCCTTCTTTTTCTTGAATTT 134628 |||||||| || || ||||||| Sbjct 2412156 GATGCCTTCCTTGTCCTGAATTT 2412134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505199626809280