Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq23 237 2e-57 seq7 116 5e-21 >seq23 Length=5684809 Score = 237 bits (262), Expect = 2e-57 Identities = 586/875 (67%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||||||||| ||||| | |||||| || |||||||| || |||| ||| || || Sbjct 1473735 TTTTGGTATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAACGAAATCAAC 1473676 Query 39386 TCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||| ||||||| || || ||| ||||||| |||| | | || ||| | || Sbjct 1473675 TCCATCCAATCAAATGGGTT--TTGAACATTATAGATTTTCTCGTACCCCAATGTTCCAA 1473618 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 ||| ||||| || |||||||| |||||| |||||| || | ||||||||| | | Sbjct 1473617 CCAACCTATCCGCCACAAATTCAATGTATTGACTCATCAAATCTCCATTCATTCCAACAA 1473558 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || | ||| || | || || | || || || |||||||| || | | Sbjct 1473557 GAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATCCACGGCCTCCGTAACAA 1473498 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | ||| || |||||| | | | || | | ||| || || || | Sbjct 1473497 TCTGCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAA 1473438 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | |||||||| || || ||||||| ||| |||||||| || || || | |||||||| Sbjct 1473437 AATCACAATGAAGACCTTCATCTCGTGAAATCAATTCGTTTGAGAACGTCAATCCAGGCA 1473378 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCT 39742 ||| ||||| ||||| | ||| || || | |||| || | || || ||||| || || Sbjct 1473377 TTAACCCACGTTTTTTCAACCAGAAAATAG-AGCAGAAACTACCTGAGAAGAAAATTCCC 1473319 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT--TATGTATCCACT 39800 || || |||||||| | || || | ||| | || | | | ||| ||||||| Sbjct 1473318 TCGACGCAAGCAAATGCCAAAA-TC-CGCTCAGCAAATGAGTCCGTGCTATCAATCCACT 1473261 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 || |||||||| || |||||||| ||||| || | || || ||||||| ||| || Sbjct 1473260 TCAACGCCCAATCGGCCTTCTTCTTCACACATGGGACAGTATCAATAGCATGAAACAGCC 1473201 Query 39861 AATGTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || | ||| ||||| ||| || | ||| || || | | ||||||||||| || | Sbjct 1473200 GAT--TCTTC-TCACTGGAATCCTTGATATAAGTTTCAAGGAGAAGACTATACATCTCAG 1473144 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| ||||| ||||| || |||||||| || || ||| ||||||| | ||| | Sbjct 1473143 AATGAATGTTCTCAATACAAATTTGAAATCCATAGAAGGCTCTGGCTTCAGCGACTTGGA 1473084 Query 39978 CCTCTGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 | ||| || | | |||| ||| || || || || |||||| ||||| || Sbjct 1473083 CTTCT-TTCATGAACCGTCCGGCAAGGTTCTCCAAAACGATACCATCAGAGGCGGCGAAG 1473025 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | || | | || || | ||| || |||| || || || ||| | | Sbjct 1473024 AAGGCAAGGACGTAAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGG 1472965 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | |||| ||| | ||| || ||||| || ||||| || || || || || |||||| Sbjct 1472964 AGGTCTTGTGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTAGGGCTTTCTTGTAC 1472905 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || | ||| || | | ||||||| ||||| || || Sbjct 1472904 ATCTCCCAGATTTGAGGATATTGAATTGGGAACAT 1472870 >seq7 Length=7328097 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | |||| ||||| | ||| | || | |||||| || | |||||| Sbjct 6776013 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 6776072 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| ||||||||| || | || |||||||| || || Sbjct 6776073 ATTAGATGTTCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 6776132 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || || || | |||||| ||| || || |||||||| Sbjct 6776133 AACACCAATACCACCAGCGGACTTGCTAATGACAGCACACTCTTTTAAGGTATCATATAT 6776192 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || ||||| ||||| || ||||| | ||| |||||||| Sbjct 6776193 TCCTTCTATACTATCCTCCTTCATGCATACAAGGAAACAGCT 6776234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686638638768960