Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 242 3e-59 seq59 87.8 1e-12 >seq23 Length=5684809 Score = 242 bits (268), Expect = 3e-59 Identities = 586/874 (67%), Gaps = 21/874 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||||| | | || ||| | |||||||| ||||| | || || || | Sbjct 1472871 TGTTCCCAATTCAATATCCTCAAATCTGGGAGATGTACAAGAAAGCCCTAGCCTCCTTCT 1472930 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || ||||| || ||| | | ||||| | |||||| | | |||| | Sbjct 1472931 GGACCGCCGAAGAGGTCGATCTCTCACAAGACCTCCGCCATTGGGATTCCTTAACTTCCG 1472990 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || ||||| || || ||| || | || || || || || || || || || Sbjct 1472991 ACGAGAAACACTTCATCACTTACGTCCTTGCCTTCTTCGCCGCCTCTGATGGTATCGTTT 1473050 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 || || | | | ||||| | ||||||| ||| | | ||||| || || | Sbjct 1473051 TGGAGAACCTTGCCGGACGGTTCATGAAAGAAGTCCAAGTCGCTGAAGCCAGAGCCTTCT 1473110 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| ||||||||| || || || |||||||| || ||||| |||||||| | || | Sbjct 1473111 ATGGATTTCAAATTTGTATTGAGAACATTCATTCTGAGATGTATAGTCTTCTCCTTGAAA 1473170 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-T 44065 | || ||||| ||| |||||| |||| ||||| |||| || || || || || | Sbjct 1473171 CTTATATCAAGGATTCCAGTGAGAAGAATCGGCTGTTTCATGCTATTGATACTGTCCCAT 1473230 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 | | | || | || || || ||||| | || ||||| || | || || |||| Sbjct 1473231 GTG-TGAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGATAGCACGGACTCATTTGCT 1473289 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCC 44185 || || || | || ||||| || || || |||||||| ||||| | |||| | || Sbjct 1473290 GAGCGGATTTTGGCATTTGCTTGCGTCGAGGGAATTTTCTTCTCAGG-TAGTTT-CTGCT 1473347 Query 44186 ATATTTT--GGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||||| |||| || ||||| || || |||||||| |||||||| ||||| || || | Sbjct 1473348 CTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTGACGTTCTCAAACGAATTGA 1473407 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG 44303 | || |||||||| | ||||| ||||||||||| ||||| | || | | | | Sbjct 1473408 TTTCACGAGATGAAGGTCTTCATTGTGATTTTGCTTGTTTGTTGTATTCAT-TGTTGAGG 1473466 Query 44304 ACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 | || | || | | || | | | | |||||| ||||| || | ||||| Sbjct 1473467 AAGAAA----TTGAGTGAGGATCGAGTGAGGCAGATTGTTACGGAGGCCGTGGATATAGA 1473522 Query 44362 ACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 ||||| | || | || || || || | | | |||||||||| | |||| Sbjct 1473523 GAGGGAATTCGTTTGTGA--TGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGAGATTTG 1473580 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC--TGGGTTGCGATA 44477 |||| ||||| ||||||| | || ||| | || ||||||| |||| | ||| | Sbjct 1473581 ATGAGTCAATACATTGAATTTGTGGCGGATAGGTT--GGTTGGAACATTGGGGTACGAGA 1473638 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 || ||||| ||| |||||||| ||||||| ||||| ||||||||| |||| || | Sbjct 1473639 AAATCTATAATGTTCAAAACCCATTTGATTGGATGGAGTTGATTTCGTTGCAAGGGAAGA 1473698 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | || || ||||| ||| | ||||| ||||| || Sbjct 1473699 CTAATTTCTTTGAGAAAAGAGTTGGGGAATACCA 1473732 >seq59 Length=2086427 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||||||| ||||| || | ||||||||| ||||||| | || | ||||||| Sbjct 1296940 CAGTTTTACGTTGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGTTCTGCTGACATG 1296881 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || || ||||| || ||| |||||||| || || | |||||||| || Sbjct 1296880 GGCCTTGGTGTTCCATTTAATATTGCGTCATATGCTCTTCTGACTTGCATGATTGCTCAT 1296821 Query 41199 GTT 41201 ||| Sbjct 1296820 GTT 1296818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397303588541320